6KRZ Membrane Protein Immune System date Aug 10, 2018
title Crystal Structure Of The Human Adiponectin Receptor 1 D208a
authors H.Tanabe, Y.Fujii, M.Okada-Iwabu, M.Iwabu, T.Yamauchi, T.Kadowaki S.Yokoyama
compound source
Molecule: Adiponectin Receptor Protein 1
Chain: A, B, C
Synonym: Progestin And Adipoq Receptor Family Member 1,Prog Adipoq Receptor Family Member I;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adipor1, Paqr1, Tesbp1a, Cgi-45
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: The Heavy Chain Variable Domain (Antibody)
Chain: D, F, H
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: The Light Chain Variable Domain (Antibody)
Chain: E, G, I
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.216 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.589 119.350 197.814 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.05 Å
ligand OLA, OLB, PO4, ZN enzyme
Primary referenceHuman adiponectin receptor AdipoR1 assumes closed and open structures., Tanabe H, Fujii Y, Okada-Iwabu M, Iwabu M, Kano K, Kawana H, Hato M, Nakamura Y, Terada T, Kimura-Someya T, Shirouzu M, Kawano Y, Yamamoto M, Aoki J, Yamauchi T, Kadowaki T, Yokoyama S, Commun Biol. 2020 Aug 14;3(1):446. doi: 10.1038/s42003-020-01160-4. PMID:32796916
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (541 Kb) [Save to disk]
  • Biological Unit Coordinates (6krz.pdb1.gz) 173 Kb
  • Biological Unit Coordinates (6krz.pdb2.gz) 172 Kb
  • Biological Unit Coordinates (6krz.pdb3.gz) 175 Kb
  • LPC: Ligand-Protein Contacts for 6KRZ
  • CSU: Contacts of Structural Units for 6KRZ
  • Structure Factors (1678 Kb)
  • Retrieve 6KRZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6KRZ from S2C, [Save to disk]
  • View 6KRZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6KRZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6krz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6krz_B] [6krz_G] [6krz_F] [6krz_I] [6krz_E] [6krz_D] [6krz_C] [6krz_H] [6krz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6KRZ
  • Community annotation for 6KRZ at PDBWiki (http://pdbwiki.org)

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