6M04 Membrane Protein date Feb 20, 2020
title Structure Of The Human Homo-Hexameric Lrrc8d Channel At 4.36
authors R.Nakamura, G.Kasuya, T.Yokoyama, M.Shirouzu, R.Ishitani, O.Nurek
compound source
Molecule: Volume-Regulated Anion Channel Subunit Lrrc8d
Chain: A, B, C, D, E, F
Synonym: Leucine-Rich Repeat-Containing Protein 5,Leucine-R Repeat-Containing Protein 8d;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lrrc8d, Lrrc5, Unq213pro239
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_variant: Gnti-
Expression_system_cell_line: Hek293s
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.36 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B
  • volume-sensitive anion chann...


  • Primary referenceCryo-EM structure of the volume-regulated anion channel LRRC8D isoform identifies features important for substrate permeation., Nakamura R, Numata T, Kasuya G, Yokoyama T, Nishizawa T, Kusakizako T, Kato T, Hagino T, Dohmae N, Inoue M, Watanabe K, Ichijo H, Kikkawa M, Shirouzu M, Jentsch TJ, Ishitani R, Okada Y, Nureki O, Commun Biol. 2020 May 15;3(1):240. doi: 10.1038/s42003-020-0951-z. PMID:32415200
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (630 Kb) [Save to disk]
  • Biological Unit Coordinates (6m04.pdb1.gz) 621 Kb
  • CSU: Contacts of Structural Units for 6M04
  • Retrieve 6M04 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6M04 from S2C, [Save to disk]
  • View 6M04 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6M04
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6m04 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6m04_D] [6m04_C] [6m04_A] [6m04_F] [6m04_B] [6m04_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6M04
  • Community annotation for 6M04 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science