6N6I Rna Binding Protein Rna date Nov 26, 2018
title Human Rexo2 Bound To Pgg
authors J.D.Lormand, H.Sondermann
compound source
Molecule: Rna Exonuclease 2 Homolog,Small Fragment Nuclease
Chain: A, B
Synonym: Rexo2
Ec: 3.1.-.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rexo2, Sfn, Smfn, Cgi-114
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21de3
Expression_system_plasmid: Pet28a

Molecule: Rna (5'-R(Pgpg)-3')
Chain: D, C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 21 21 21
R_factor 0.158 R_Free 0.178
length a length b length c angle alpha angle beta angle gamma
45.814 87.289 123.797 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.43 Å
ligand EDO, GOL, MLI, NA enzyme Hydrolase E.C.3.1 BRENDA
A, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (6n6i.pdb1.gz) 70 Kb
  • Biological Unit Coordinates (6n6i.pdb2.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 6N6I
  • CSU: Contacts of Structural Units for 6N6I
  • Structure Factors (3577 Kb)
  • Retrieve 6N6I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6N6I from S2C, [Save to disk]
  • View 6N6I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6N6I
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6n6i from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6n6i_C] [6n6i_A] [6n6i_B] [6n6i_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6N6I
  • Community annotation for 6N6I at PDBWiki (http://pdbwiki.org)

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