6NF0 Hydrolase date Dec 18, 2018
title Nocturnin With Bound Nadph Substrate
authors M.A.Estrella, J.Du, A.Korennykh
compound source
Molecule: Nocturnin
Chain: A
Synonym: Carbon Catabolite Repression 4-Like Protein,Circad Deadenylase Noc;
Ec: 3.1.13.4
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Noct, Ccr4, Ccrn4l, Noc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 21 2
R_factor 0.206 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.888 62.888 153.597 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand CA, NDP enzyme Hydrolase E.C.3.1.13.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe metabolites NADP(+) and NADPH are the targets of the circadian protein Nocturnin (Curled)., Estrella MA, Du J, Chen L, Rath S, Prangley E, Chitrakar A, Aoki T, Schedl P, Rabinowitz J, Korennykh A, Nat Commun. 2019 May 30;10(1):2367. doi: 10.1038/s41467-019-10125-z. PMID:31147539
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (6nf0.pdb1.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 6NF0
  • CSU: Contacts of Structural Units for 6NF0
  • Structure Factors (207 Kb)
  • Retrieve 6NF0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6NF0 from S2C, [Save to disk]
  • View 6NF0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6NF0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6nf0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6nf0_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6NF0
  • Community annotation for 6NF0 at PDBWiki (http://pdbwiki.org)

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