6NMY Cytokine date Jan 13, 2019
title A Cytokine-Receptor Complex
authors U.Dhagat, W.L.Kan, T.R.Hercus, S.E.Broughton, T.L.Nero, A.F.Lopez M.W.Parker
compound source
Molecule: Interleukin-3 Receptor Subunit Alpha
Chain: F, M
Synonym: Il-3ra
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Il3ra, Il3r
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus

Molecule: Cytokine Receptor Common Subunit Beta
Chain: A, C
Synonym: Cdw131,Gm-Csfil-3il-5 Receptor Common Beta Subun
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Csf2rb, Il3rb, Il5rb
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus

Molecule: Interleukin-3
Chain: I, J
Synonym: Il-3,Hematopoietic Growth Factor,Mast Cell Growth Mcgf,Multipotential Colony-Stimulating Factor,P-Cell-Stimul Factor;
Engineered: Yes
Mutation: Yes
Other_details: The First 4 N-Terminal Residues (Gamg) Are D From Fusion Protein;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Il3
Expression_system: Escherichia Coli K-12
Expression_system_taxid: 83333

Molecule: Cytokine Receptor Common Subunit Beta
Chain: B, D
Synonym: Cdw131,Gm-Csfil-3il-5 Receptor Common Beta Subun
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Csf2rb, Il3rb, Il5rb
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.236 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
111.647 157.251 168.306 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.30 Å
ligand BMA, FUC, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
D, B


F, M


J, I


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (540 Kb) [Save to disk]
  • Biological Unit Coordinates (6nmy.pdb1.gz) 271 Kb
  • Biological Unit Coordinates (6nmy.pdb2.gz) 266 Kb
  • LPC: Ligand-Protein Contacts for 6NMY
  • CSU: Contacts of Structural Units for 6NMY
  • Structure Factors (723 Kb)
  • Retrieve 6NMY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6NMY from S2C, [Save to disk]
  • View 6NMY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6NMY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6nmy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6nmy_C] [6nmy_A] [6nmy_F] [6nmy_I] [6nmy_J] [6nmy_B] [6nmy_D] [6nmy_M]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6NMY
  • Community annotation for 6NMY at PDBWiki (http://pdbwiki.org)

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