6NNQ Hydrolase Protein Binding date Jan 15, 2019
title Non-Covalent Structure Of Senp1 In Complex With Sumo2
authors N.D.Ambaye
compound source
Molecule: Sentrin-Specific Protease 1
Chain: A
Fragment: Residues 421-643
Synonym: Sentrinsumo-Specific Protease Senp1
Ec: 3.4.22.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Senp1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Small Ubiquitin-Related Modifier 3
Chain: B
Fragment: Residues 15-92
Synonym: Sumo-3,Smt3 Homolog 1,Sumo-2,Ubiquitin-Like Protei Smt3a;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sumo3, Smt3a, Smt3h1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 2 2
R_factor 0.229 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.732 98.732 101.805 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.62 Å
ligand
enzyme Hydrolase E.C.3.4.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (6nnq.pdb1.gz) 107 Kb
  • CSU: Contacts of Structural Units for 6NNQ
  • Structure Factors (433 Kb)
  • Retrieve 6NNQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6NNQ from S2C, [Save to disk]
  • View 6NNQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6NNQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6nnq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6nnq_A] [6nnq_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6NNQ
  • Community annotation for 6NNQ at PDBWiki (http://pdbwiki.org)

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