6OFB Ligase date Mar 28, 2019
title Crystal Structure Of Human Glutamine-Dependent Nad+ Syntheta Complexed With Naad+, Amp, Pyrophosphate, And Mg2+
authors W.Chuenchor, T.I.Doukov, B.Gerratana
compound source
Molecule: Glutamine-Dependent Nad(+) Synthetase
Chain: A, B
Synonym: Nad(+) Synthase [Glutamine-Hydrolyzing],Nad(+) Syn
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nadsyn1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pi-Sumostar
symmetry Space Group: I 2 2 2
R_factor 0.179 R_Free 0.217
length a length b length c angle alpha angle beta angle gamma
102.250 198.890 219.690 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.84 Å
ligand AMP, CL, DND, MG, POP enzyme Ligase E.C. BRENDA
A, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (235 Kb) [Save to disk]
  • Biological Unit Coordinates (6ofb.pdb1.gz) 899 Kb
  • LPC: Ligand-Protein Contacts for 6OFB
  • CSU: Contacts of Structural Units for 6OFB
  • Structure Factors (1142 Kb)
  • Retrieve 6OFB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6OFB from S2C, [Save to disk]
  • View 6OFB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6OFB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6ofb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ofb_B] [6ofb_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6OFB
  • Community annotation for 6OFB at PDBWiki (http://pdbwiki.org)

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