6QDT Chaperone date Jan 02, 2019
title Crystal Structure Of 14-3-3sigma In Complex With A Rapgef2 P Phosphopeptide
authors S.A.Andrei, A.Kaplan, A.E.Fournier, C.Ottman
compound source
Molecule: 14-3-3 Protein Sigma
Chain: A
Synonym: Epithelial Cell Marker Protein 1,Stratifin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sfn, Hme1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Rap Guanine Nucleotide Exchange Factor 2
Chain: B
Synonym: Cyclic Nucleotide Ras Gef,Cnrasgef,Neural Rap Guan Nucleotide Exchange Protein,Nrap Gep,Pdz Domain-Containing Nucleotide Exchange Factor 1,Pdz-Gef1,Ra-Gef-1,Rasrap1-Ass Gef-1;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: C 2 2 21
R_factor 0.162 R_Free 0.192
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.657 112.411 62.749 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand CA, CL, NA, TPO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • protein kinase C inhibitor a...
  • positive regulation of prote...

  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (6qdt.pdb1.gz) 273 Kb
  • LPC: Ligand-Protein Contacts for 6QDT
  • CSU: Contacts of Structural Units for 6QDT
  • Structure Factors (489 Kb)
  • Retrieve 6QDT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6QDT from S2C, [Save to disk]
  • View 6QDT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6QDT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6qdt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6qdt_B] [6qdt_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6QDT
  • Community annotation for 6QDT at PDBWiki (http://pdbwiki.org)

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