6SGE Immune System date Aug 04, 2019
title Crystal Structure Of Human Rhob-Gtp In Complex With Nanobody
authors S.Soulie, R.Gence, S.Cabantous, I.Lajoie-Mazenc, G.Favre, J.D.Ped
compound source
Molecule: Rho-Related Gtp-Binding Protein Rhob
Chain: A, C
Synonym: Rho Cdna Clone 6,H6
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rhob, Arh6, Arhb
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Nanobody B6
Chain: B, D
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.161 R_Free 0.188
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.840 70.227 71.212 90.00 107.68 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand GTP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (325 Kb) [Save to disk]
  • Biological Unit Coordinates (6sge.pdb1.gz) 156 Kb
  • Biological Unit Coordinates (6sge.pdb2.gz) 161 Kb
  • LPC: Ligand-Protein Contacts for 6SGE
  • CSU: Contacts of Structural Units for 6SGE
  • Structure Factors (1900 Kb)
  • Retrieve 6SGE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6SGE from S2C, [Save to disk]
  • View 6SGE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6SGE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6sge from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6sge_D] [6sge_C] [6sge_A] [6sge_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6SGE
  • Community annotation for 6SGE at PDBWiki (http://pdbwiki.org)

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