6TU9 Signaling Protein date Jan 04, 2020
title The Ror1 Pseudokinase Domain Bound To Ponatinib
authors S.Mathea, F.Preuss, D.Chatterjee, W.Niininen, D.Ungureanu, D.Shin C.H.Arrowsmith, A.M.Edwards, C.Bountra, S.Knapp
compound source
Molecule: Inactive Tyrosine-Protein Kinase Transmembrane Re Ror1;
Chain: A, B
Synonym: Neurotrophic Tyrosine Kinase,Receptor-Related 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ror1, Ntrkr1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: P 1 21 1
R_factor 0.209 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.290 85.969 72.980 90.00 91.05 90.00
method X-Ray Diffractionresolution 1.94 Å
ligand 0LI enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural Insights into Pseudokinase Domains of Receptor Tyrosine Kinases., Sheetz JB, Mathea S, Karvonen H, Malhotra K, Chatterjee D, Niininen W, Perttila R, Preuss F, Suresh K, Stayrook SE, Tsutsui Y, Radhakrishnan R, Ungureanu D, Knapp S, Lemmon MA, Mol Cell. 2020 Jun 24. pii: S1097-2765(20)30420-2. doi:, 10.1016/j.molcel.2020.06.018. PMID:32619402
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (179 Kb) [Save to disk]
  • Biological Unit Coordinates (6tu9.pdb1.gz) 89 Kb
  • Biological Unit Coordinates (6tu9.pdb2.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 6TU9
  • CSU: Contacts of Structural Units for 6TU9
  • Structure Factors (1223 Kb)
  • Retrieve 6TU9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6TU9 from S2C, [Save to disk]
  • View 6TU9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6TU9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6tu9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6tu9_A] [6tu9_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6TU9
  • Community annotation for 6TU9 at PDBWiki (http://pdbwiki.org)

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