6U3V Transport Protein date Aug 22, 2019
title Crystal Structure Of Human Alphaepsilon-Cop Of The Copi Ves Coat Bound To Alpha-Cop Stm1
authors S.M.Travis, F.M.Hughson
compound source
Molecule: Coatomer Subunit Epsilon
Chain: A, C
Synonym: Epsilon-Coat Protein,Epsilon-Cop
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: T47d
Atcc: Htb-133
Cell: Epithelial
Gene: Cope
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_variant: C43 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petduet-1

Molecule: Coatomer Subunit Alpha
Chain: B, D
Synonym: Alpha-Coat Protein,Alpha-Cop,Hep-Cop,Hepcop
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: T47d
Atcc: Htb-133
Cell: Epithelial
Gene: Copa
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_variant: C43 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petduet-1
symmetry Space Group: P 31 2 1
R_factor 0.172 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
138.103 138.103 192.940 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.96 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (421 Kb) [Save to disk]
  • Biological Unit Coordinates (6u3v.pdb1.gz) 419 Kb
  • Biological Unit Coordinates (6u3v.pdb2.gz) 211 Kb
  • Biological Unit Coordinates (6u3v.pdb3.gz) 207 Kb
  • CSU: Contacts of Structural Units for 6U3V
  • Structure Factors (1203 Kb)
  • Retrieve 6U3V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6U3V from S2C, [Save to disk]
  • View 6U3V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6U3V
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6u3v from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6u3v_A] [6u3v_B] [6u3v_D] [6u3v_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6U3V
  • Community annotation for 6U3V at PDBWiki (http://pdbwiki.org)

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