6U6U Cytokine date Aug 30, 2019
title Il36r Extracellular Domain In Complex With Bi655130 Fab
authors E.T.Larson, N.A.Farrow
compound source
Molecule: Bi00655130 Fab Heavy Chain
Chain: H
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029

Molecule: Bi00655130 Fab Light Chain
Chain: L
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029

Molecule: Interleukin-1 Receptor-Like 2
Chain: R
Fragment: Residues 20-215
Synonym: Il-36 Receptor,Il-36r,Interleukin-1 Receptor-Relat 2,Il1r-Rp2;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Il1rl2, Il1rrp2
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.179 R_Free 0.202
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.698 70.663 233.268 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.31 Å
ligand NA, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
R


Primary referenceX-ray Crystal Structure Localizes the Mechanism of Inhibition of an IL-36R Antagonist Monoclonal Antibody to Interaction with Ig1 and Ig2 ECDs., Larson ET, Brennan DL, Hickey ER, Ganesan R, Kroe-Barrett R, Farrow NA, Protein Sci. 2020 Apr 2. doi: 10.1002/pro.3862. PMID:32239732
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (216 Kb) [Save to disk]
  • Biological Unit Coordinates (6u6u.pdb1.gz) 210 Kb
  • LPC: Ligand-Protein Contacts for 6U6U
  • CSU: Contacts of Structural Units for 6U6U
  • Structure Factors (1243 Kb)
  • Retrieve 6U6U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6U6U from S2C, [Save to disk]
  • View 6U6U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6U6U
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6u6u from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6u6u_H] [6u6u_L] [6u6u_R]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6U6U
  • Community annotation for 6U6U at PDBWiki (http://pdbwiki.org)

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