6VME Protein Transport date Jan 27, 2020
title Human Escrt-I Heterotetramer Headpiece
authors T.G.Flower, J.H.Hurley, N.Tjahjono
compound source
Molecule: Tumor Susceptibility Gene 101 Protein
Chain: B, F, G, H, I, J
Synonym: Escrt-I Complex Subunit Tsg101
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tsg101
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693

Molecule: Vacuolar Protein Sorting-Associated Protein 37b
Chain: C, K, L, M, N, O
Synonym: Hvps37b,Escrt-I Complex Subunit Vps37b
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Vps37b
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693

Molecule: Multivesicular Body Subunit 12a
Chain: D, P, Q, R, A, T
Synonym: Cin85cd2ap Family-Binding Protein,Escrt-I Complex Mvb12a,Protein Fam125a;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mvb12a, Cfbp, Fam125a
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693

Molecule: Vacuolar Protein Sorting-Associated Protein 28 Ho
Chain: E, U, V, W, X, Y
Synonym: H-Vps28,Escrt-I Complex Subunit Vps28
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Vps28
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
symmetry Space Group: P 61
R_factor 0.193 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
162.584 162.584 139.715 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.19 Å
Gene
Ontology
ChainFunctionProcessComponent
N, K, M, C, L, O


T, Q, A, P, D, R


Y, E, V, W, X, U


Primary referenceA helical assembly of human ESCRT-I scaffolds reverse-topology membrane scission., Flower TG, Takahashi Y, Hudait A, Rose K, Tjahjono N, Pak AJ, Yokom AL, Liang X, Wang HG, Bouamr F, Voth GA, Hurley JH, Nat Struct Mol Biol. 2020 May 18. pii: 10.1038/s41594-020-0426-4. doi:, 10.1038/s41594-020-0426-4. PMID:32424346
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (548 Kb) [Save to disk]
  • Biological Unit Coordinates (6vme.pdb1.gz) 91 Kb
  • Biological Unit Coordinates (6vme.pdb2.gz) 91 Kb
  • Biological Unit Coordinates (6vme.pdb3.gz) 90 Kb
  • Biological Unit Coordinates (6vme.pdb4.gz) 91 Kb
  • Biological Unit Coordinates (6vme.pdb5.gz) 91 Kb
  • Biological Unit Coordinates (6vme.pdb6.gz) 90 Kb
  • CSU: Contacts of Structural Units for 6VME
  • Structure Factors (3752 Kb)
  • Retrieve 6VME in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6VME from S2C, [Save to disk]
  • View 6VME in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6VME
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6vme from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6vme_C] [6vme_H] [6vme_W] [6vme_F] [6vme_R] [6vme_N] [6vme_V] [6vme_L] [6vme_P] [6vme_M] [6vme_J] [6vme_B] [6vme_O] [6vme_K] [6vme_D] [6vme_X] [6vme_I] [6vme_U] [6vme_Q] [6vme_T] [6vme_E] [6vme_Y] [6vme_A] [6vme_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6VME
  • Community annotation for 6VME at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science