6WGE Cell Cycle Dna date Apr 05, 2020
title Cryo-Em Structure Of Human Cohesin-Nipbl-Dna Complex Without
authors Z.B.Shi, H.Gao, X.C.Bai, H.Yu
compound source
Molecule: Structural Maintenance Of Chromosomes Protein 1a
Chain: A
Synonym: Smc-1a,Sb1.8
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smc1a, Dxs423e, Kiaa0178, Sb1.8, Smc1, Smc1l1
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Structural Maintenance Of Chromosomes Protein 3
Chain: B
Synonym: Smc-3,Basement Membrane-Associated Chondroitin Pro Bamacan,Chondroitin Sulfate Proteoglycan 6,Chromosome-Assoc Polypeptide,Hcap;
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smc3, Bam, Bmh, Cspg6, Smc3l1
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Double-Strand-Break Repair Protein Rad21 Homolog
Chain: C
Synonym: Hhr21,Nuclear Matrix Protein 1,Nxp-1,Scc1 Homolog
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rad21, Hr21, Kiaa0078, Nxp1, Scc1
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Nipped-B-Like Protein
Chain: E
Synonym: Delangin,Scc2 Homolog
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nipbl, Idn3, Scc2
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Dna (43-Mer)
Chain: F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Dna (43-Mer)
Chain: G
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.90 Å
ligand ANP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


E


Primary referenceCryo-EM structure of the human cohesin-NIPBL-DNA complex., Shi Z, Gao H, Bai XC, Yu H, Science. 2020 May 14. pii: science.abb0981. doi: 10.1126/science.abb0981. PMID:32409525
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (383 Kb) [Save to disk]
  • Biological Unit Coordinates (6wge.pdb1.gz) 366 Kb
  • LPC: Ligand-Protein Contacts for 6WGE
  • CSU: Contacts of Structural Units for 6WGE
  • Retrieve 6WGE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6WGE from S2C, [Save to disk]
  • View 6WGE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6WGE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6wge from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6wge_A] [6wge_G] [6wge_E] [6wge_C] [6wge_F] [6wge_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6WGE
  • Community annotation for 6WGE at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science