6WN4 Immune System date Apr 22, 2020
title Structural Basis For The Binding Of Monoclonal Antibody 5d2 Tryptophan-Rich Lipid-Binding Loop In Lipoprotein Lipase
authors J.G.Luz, G.Birrane, S.G.Young, M.Meiyappan, M.Ploug
compound source
Molecule: 5d2 Fab Heavy Chain
Chain: A, H
Organism_scientific: Mus Musculus
Organism_taxid: 10090

Molecule: 5d2 Fab Light Chain
Chain: B, L

Organism_scientific: Mus Musculus
Organism_taxid: 10090

Molecule: Lipoprotein Lipase Peptide
Chain: C, D
Fragment: Tryptophan-Rich Lipid-Binding Loop
Synonym: Lpl
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.208 R_Free 0.243
length a length b length c angle alpha angle beta angle gamma
51.624 67.745 130.073 90.00 94.37 90.00
method X-Ray Diffractionresolution 2.80 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk]
  • Biological Unit Coordinates (6wn4.pdb1.gz) 69 Kb
  • Biological Unit Coordinates (6wn4.pdb2.gz) 71 Kb
  • CSU: Contacts of Structural Units for 6WN4
  • Structure Factors (640 Kb)
  • Retrieve 6WN4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6WN4 from S2C, [Save to disk]
  • View 6WN4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6WN4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6wn4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6wn4_B] [6wn4_A] [6wn4_H] [6wn4_C] [6wn4_L] [6wn4_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6WN4
  • Community annotation for 6WN4 at PDBWiki (http://pdbwiki.org)

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