6YGJ Structural Protein date Mar 27, 2020
title Small-Molecule Stabilizer Of 14-3-3 And The Carbohydrate Res Element Binding Protein (Chrebp) Protein-Protein Interactio
authors C.Ottmann, E.J.Visser
compound source
Molecule: 14-3-3 Protein Betaalpha
Chain: A
Synonym: Protein 1054,Protein Kinase C Inhibitor Protein 1,
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ywhab
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Carbohydrate-Responsive Element-Binding Protein
Chain: B, I
Synonym: Chrebp,Class D Basic Helix-Loop-Helix Protein 14,B Interactor,Mlx-Interacting Protein-Like,Ws Basic-Helix-Loop Leucine Zipper Protein,Ws-Bhlh,Williams-Beuren Syndrome Chr Region 14 Protein;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 14-3-3 Protein Betaalpha
Chain: F
Synonym: Protein 1054,Protein Kinase C Inhibitor Protein 1,
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ywhab
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.221 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.787 76.686 90.289 90.00 119.22 90.00
method X-Ray Diffractionresolution 2.07 Å
ligand OQE enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A
  • protein kinase inhibitor act...
  • positive regulation of prote...

  • Primary referenceStructure-based evolution of a promiscuous inhibitor to a selective stabilizer of protein-protein interactions., Sijbesma E, Visser E, Plitzko K, Thiel P, Milroy LG, Kaiser M, Brunsveld L, Ottmann C, Nat Commun. 2020 Aug 7;11(1):3954. doi: 10.1038/s41467-020-17741-0. PMID:32770072
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (165 Kb) [Save to disk]
  • Biological Unit Coordinates (6ygj.pdb1.gz) 156 Kb
  • LPC: Ligand-Protein Contacts for 6YGJ
  • CSU: Contacts of Structural Units for 6YGJ
  • Structure Factors (967 Kb)
  • Retrieve 6YGJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6YGJ from S2C, [Save to disk]
  • View 6YGJ in 3D
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6YGJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6ygj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ygj_B] [6ygj_I] [6ygj_A] [6ygj_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6YGJ
  • Community annotation for 6YGJ at PDBWiki (http://pdbwiki.org)

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