6YPE	Cell Adhesion	date	Apr 15, 2020
title	Crystal Structure Of The Human Neuronal Pentraxin 1 (Np1) Pe (Ptx) Domain.
authors	J.Elegheert, A.J.Clayton, A.R.Aricescu
compound		source
Molecule: Neuronal Pentraxin-1 Chain: A, B Synonym: Np1,Neuronal Pentraxin I,Np-I Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nptx1 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293t Expression_system_atcc_number: Crl-1573 Expression_system_plasmid: Phlsec
symmetry	Space Group: C 1 2 1	R_factor 0.153 R_Free 0.178
crystal cell	length a length b length c angle alpha angle beta angle gamma 121.220 36.060 92.170 90.00 97.47 90.00
method	X-Ray Diffraction	resolution	1.45 Å
ligand	CA, CAC	enzyme
Primary reference	A synthetic synaptic organizer protein restores glutamatergic neuronal circuits., Suzuki K, Elegheert J, Song I, Sasakura H, Senkov O, Matsuda K, Kakegawa W, Clayton AJ, Chang VT, Ferrer-Ferrer M, Miura E, Kaushik R, Ikeno M, Morioka Y, Takeuchi Y, Shimada T, Otsuka S, Stoyanov S, Watanabe M, Takeuchi K, Dityatev A, Aricescu AR, Yuzaki M, Science. 2020 Aug 28;369(6507). pii: 369/6507/eabb4853. doi:, 10.1126/science.abb4853. PMID:32855309

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk] Biological Unit Coordinates (6ype.pdb1.gz) 71 Kb Biological Unit Coordinates (6ype.pdb2.gz) 69 Kb LPC: Ligand-Protein Contacts for 6YPE CSU: Contacts of Structural Units for 6YPE Structure Factors (2220 Kb) Retrieve 6YPE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6YPE from S2C, [Save to disk]

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Visual 3D analysis of 6YPE

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6ype_A] [6ype_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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