1BOY	Class 2 Cytokine Receptor	date	Jan 11, 1996
title	Extracellular Region Of Human Tissue Factor
authors	C.W.G.Boys, E.G.D.Tuddenham, K.Harlos
compound		source
Molecule: Human Tissue Factor Chain: A Fragment: Extracellular Domain, Residues 1 - 219 Synonym: Tf Engineered: Yes Other_details: Type B Crystals		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Strain: W3110 Variant: Tona Atcc: 27325 Organ: Blood Gene: Human Tissue Factor Cdna Codon Expression_system: Periplasmic Secretion (U.S Pat 4963, 495); Expression_system_plasmid: Phgh4l (Gene 55:189-196, 1987) Expression_system_gene: Human Tissue Factor Cdna Codons 1- 119; Other_details: Purified By Monoclonal Antibody Affinity, Reversed Phase Hplc And Iso-Electric Focussing
symmetry	Space Group: P 41 21 2	R_factor 0.203 R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 45.400 45.400 230.800 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
related structures	by homologous chain: 1A21, 1FAK
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of the extracellular region of human tissue factor., Harlos K, Martin DM, O'Brien DP, Jones EY, Stuart DI, Polikarpov I, Miller A, Tuddenham EG, Boys CW, Nature 1994 Aug 25;370(6491):662-6. PMID:8065454

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk] Biological Unit Coordinates (1boy.pdb1.gz) 74 Kb CSU: Contacts of Structural Units for 1BOY Likely Quarternary Molecular Structure file(s) for 1BOY Retrieve 1BOY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1BOY from S2C, [Save to disk]

View 1BOY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1BOY

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1BOY, from MSDmotif at EBI Genome occurence of 1BOY's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1boy_2, region 107-213 [Jmol] [rasmolscript] [script source]     - Domain d1boy_1, region 3-106 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1boy_A] [1boy] SWISS-PROT database: [P13726] Domain organization of [TF_HUMAN] by SWISSPFAM

Other resources with information on 1BOY

Community annotation for 1BOY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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