1BQQ Hydrolase Hydrolase Inhibitor date Aug 18, 1998
title Crystal Structure Of The Mt1-Mmp--Timp-2 Complex
authors C.Fernandez-Catalan, W.Bode, R.Huber, D.Turk, J.J.Calvete, A.Lichte, H.Tschesche, K.Maskos
compound source
Molecule: Membrane-Type Matrix Metalloproteinase
Chain: M
Synonym: Cdmt1-Mmp; Matrix Metalloproteinase-14; Mmp-14 Mt-Mmp 1; Mtmmp1;
Ec: 3.4.24.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Metalloproteinase Inhibitor 2
Chain: T
Synonym: Timp-2; Tissue Inhibitor Of Metalloproteinases-2 Collagenase Inhibitor;
Engineered: Yes

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.189 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.650 40.100 85.680 90.00 102.30 90.00
method X-Ray Diffractionresolution 2.75 Å
ligand CA, ZN enzyme Hydrolase E.C.3.4.24 BRENDA
related structures by homologous chain: 1BR9, 1BUV
Gene
Ontology
ChainFunctionProcessComponent
M


T


Primary referenceCrystal structure of the complex formed by the membrane type 1-matrix metalloproteinase with the tissue inhibitor of metalloproteinases-2, the soluble progelatinase A receptor., Fernandez-Catalan C, Bode W, Huber R, Turk D, Calvete JJ, Lichte A, Tschesche H, Maskos K, EMBO J 1998 Sep 1;17(17):5238-48. PMID:9724659
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (1bqq.pdb1.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 1BQQ
  • CSU: Contacts of Structural Units for 1BQQ
  • Likely Quarternary Molecular Structure file(s) for 1BQQ
  • Retrieve 1BQQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BQQ from S2C, [Save to disk]
  • View 1BQQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BQQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BQQ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bqqm_, region M [Jmol] [rasmolscript] [script source]
        - Domain d1bqqt_, region T [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bqq_T] [1bqq] [1bqq_M]
  • SWISS-PROT database: [P50281] [P16368]
  • Domain organization of [MMP14_HUMAN] [TIMP2_BOVIN] by SWISSPFAM
  • Domains found in 1BQQ: [C345C] [NTR] [ZnMc ] by SMART
  • Other resources with information on 1BQQ
  • Community annotation for 1BQQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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