1DAN	Hydrolase Hydrolase Inhibitor	date	Mar 05, 1997
title	Complex Of Active Site Inhibited Human Blood Coagulation Fac With Human Recombinant Soluble Tissue Factor
authors	D.W.Banner
compound		source
Molecule: Blood Coagulation Factor Viia Light Chain Chain: L Ec: 3.4.21.21 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Baby Hamster Kidney Cells Organ: Blood Expression_system: Mesocricetus Auratus Expression_system_common: Golden Hamster Expression_system_taxid: 10036 Expression_system_cell_line: Bhk Cells
Molecule: Blood Coagulation Factor Viia Heavy Chain Chain: H Ec: 3.4.21.21 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Baby Hamster Kidney Cells Organ: Blood Expression_system: Mesocricetus Auratus Expression_system_common: Golden Hamster Expression_system_taxid: 10036 Expression_system_cell_line: Bhk Cells
Molecule: Soluble Tissue Factor Chain: T Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Baby Hamster Kidney Cells Organ: Blood Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Soluble Tissue Factor Chain: U Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Baby Hamster Kidney Cells Organ: Blood Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.187 R_Free 0.218
crystal cell	length a length b length c angle alpha angle beta angle gamma 70.650 82.550 126.500 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	0Z6, BGC, CA, CAC, CGU, CL, FUC	enzyme	Hydrolase E.C.3.4.21.21 BRENDA
note	1DAN (Molecule of the Month:pdb75)
related structures	by homologous chain: 1JPS, 1KLI, 1YGC, 1Z6J
Gene Ontology	Chain Function Process Component H L T, U
Primary reference	The crystal structure of the complex of blood coagulation factor VIIa with soluble tissue factor., Banner DW, D'Arcy A, Chene C, Winkler FK, Guha A, Konigsberg WH, Nemerson Y, Kirchhofer D, Nature 1996 Mar 7;380(6569):41-6. PMID:8598903

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk] Biological Unit Coordinates (1dan.pdb1.gz) 101 Kb LPC: Ligand-Protein Contacts for 1DAN CSU: Contacts of Structural Units for 1DAN Likely Quarternary Molecular Structure file(s) for 1DAN Structure Factors (451 Kb) Retrieve 1DAN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1DAN from S2C, [Save to disk] Re-refined 1dan structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1DAN in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1DAN

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1DAN, from MSDmotif at EBI Genome occurence of 1DAN's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1danh_, region H [Jmol] [rasmolscript] [script source]     - Domain d1danl3, region L:1-48 [Jmol] [rasmolscript] [script source]     - Domain d1danl1, region L:49-86 [Jmol] [rasmolscript] [script source]     - Domain d1danl2, region L:87-142 [Jmol] [rasmolscript] [script source]     - Domain d1dan.1, region T:,U:91-106 [Jmol] [rasmolscript] [script source]     - Domain d1danu1, region U:107-210 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1dan_H] [1dan_T] [1dan_L] [1dan_U] [1dan_C] [1dan] SWISS-PROT database: [P08709] [P13726] Domain organization of [FA7_HUMAN] [TF_HUMAN] by SWISSPFAM Domains found in 1DAN: [EGF_CA] [EGF_like] [GLA] [Tryp_SPc ] by SMART

Other resources with information on 1DAN

Community annotation for 1DAN at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Domain movements in 1DAN from the Database of Macromolecular Movements. Images from IMB Jena Image Library of Biological Macromolecules.

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