1Z6J Hydrolase date Mar 22, 2005
title Crystal Structure Of A Ternary Complex Of Factor Viiatissue Factorpyrazinone Inhibitor
authors B.A.Schweitzer, W.L.Neumann, H.K.Rahman, C.L.Kusturin, K.R.Sample, G.I.Poda, R.G.Kurumbail, A.M.Stevens, R.A.Stegeman, W.C.Stallings
compound source
Molecule: Coagulation Factor Vii
Chain: L
Fragment: Light Chain
Synonym: Serum Prothrombin Conversion Accelerator, Spca, Proconvertin, Eptacog Alfa;
Ec: 3.4.21.21
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: F7
Expression_system: Cricetinae
Expression_system_common: Hamsters
Expression_system_taxid: 10026
Expression_system_organ: Kidney

Molecule: Coagulation Factor Vii
Chain: H
Fragment: Heavy Chain
Synonym: Serum Prothrombin Conversion Accelerator, Spca, Proconvertin, Eptacog Alfa;
Ec: 3.4.21.21
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: F7
Expression_system: Cricetinae
Expression_system_common: Hamsters
Expression_system_taxid: 10026
Expression_system_organ: Kidney

Molecule: Tissue Factor
Chain: T
Fragment: Residues 33-243
Synonym: Tf, Coagulation Factor III, Thromboplastin, Cd142 Antigen;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: F3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.209 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.652 81.137 125.577 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CA, CGU, MG, PY3 BindingDB enzyme Hydrolase E.C.3.4.21.21 BRENDA
related structures by homologous chain: 1DAN, 1JBU, 1O5D
Gene
Ontology
ChainFunctionProcessComponent
H


L


T


Primary referenceStructure-based design and synthesis of pyrazinones containing novel P1 'side pocket' moieties as inhibitors of TF/VIIa., Schweitzer BA, Neumann WL, Rahman HK, Kusturin CL, Sample KR, Poda GI, Kurumbail RG, Stevens AM, Stegeman RA, Stallings WC, South MS, Bioorg Med Chem Lett 2005 Jun 15;15(12):3006-11. PMID:15913999
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk]
  • Biological Unit Coordinates (1z6j.pdb1.gz) 107 Kb
  • LPC: Ligand-Protein Contacts for 1Z6J
  • CSU: Contacts of Structural Units for 1Z6J
  • Likely Quarternary Molecular Structure file(s) for 1Z6J
  • Structure Factors (335 Kb)
  • Retrieve 1Z6J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Z6J from S2C, [Save to disk]
  • Re-refined 1z6j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1Z6J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Z6J
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1Z6J, from MSDmotif at EBI
  • Fold representative 1z6j from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1z6j_T] [1z6j_H] [1z6j] [1z6j_L]
  • SWISS-PROT database: [P08709] [P13726]
  • Domain organization of [FA7_HUMAN] [TF_HUMAN] by SWISSPFAM
  • Domains found in 1Z6J: [EGF] [EGF_CA] [GLA] [Tryp_SPc ] by SMART
  • Other resources with information on 1Z6J
  • Community annotation for 1Z6J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science