1DMO Calcium-Binding Protein date Apr 24, 1996
title Calmodulin, Nmr, 30 Structures
authors M.Zhang, T.Tanaka, M.Ikura
compound source
Molecule: Calmodulin
Chain: A
Engineered: Yes
Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Gene: Xenopus Laevis
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pas
Expression_system_gene: Xenopus Laevis
methodSolution NMR
related structures by homologous chain: 1DEG, 1F54
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCalcium-induced conformational transition revealed by the solution structure of apo calmodulin., Zhang M, Tanaka T, Ikura M, Nat Struct Biol 1995 Sep;2(9):758-67. PMID:7552747
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1154 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1DMO
  • Original NMR restraints for 1DMO from PDB
  • Retrieve 1DMO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DMO from S2C, [Save to disk]
  • View 1DMO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DMO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1DMO, from MSDmotif at EBI
  • Genome occurence of 1DMO's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dmo__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1dmo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dmo] [1dmo_A]
  • SWISS-PROT database: [P62155]
  • Domain organization of [CALM_XENLA] by SWISSPFAM
  • Domain found in 1DMO: [EFh ] by SMART
  • Other resources with information on 1DMO
  • Community annotation for 1DMO at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1DMO from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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