1F3F	Transferase	date	Jun 02, 2000
title	Structure Of The H122g Nucleoside Diphosphate Kinase D4t- Triphosphate.Mg Complex
authors	P.Meyer, B.Schneider, S.Sarfati, D.Deville-Bonne, C.Guerreiro, J. J.Janin, M.Veron, B.Canard
compound		source
Molecule: Protein (Nucleoside Diphosphate Kinase) Chain: A, B, C Synonym: Ndp Kinase, Ndk Ec: 2.7.4.6 Engineered: Yes Mutation: Yes		Organism_scientific: Dictyostelium Discoideum Organism_taxid: 44689 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Ptz18r
symmetry	Space Group: P 31 2 1	R_factor 0.203 R_Free 0.234
crystal cell	length a length b length c angle alpha angle beta angle gamma 70.018 70.018 152.098 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.85 Å
ligand	D4D, D4T, MG, PO4	enzyme	Transferase E.C.2.7.4.6 BRENDA
related structures	by homologous chain: 1HLW, 1NPK
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	Structural basis for activation of alpha-boranophosphate nucleotide analogues targeting drug-resistant reverse transcriptase., Meyer P, Schneider B, Sarfati S, Deville-Bonne D, Guerreiro C, Boretto J, Janin J, Veron M, Canard B, EMBO J 2000 Jul 17;19(14):3520-9. PMID:10899107

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk] Biological Unit Coordinates (1f3f.pdb1.gz) 152 Kb LPC: Ligand-Protein Contacts for 1F3F CSU: Contacts of Structural Units for 1F3F Likely Quarternary Molecular Structure file(s) for 1F3F Retrieve 1F3F in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1F3F from S2C, [Save to disk]

View 1F3F in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1F3F

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1F3F, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1f3fa_, region A [Jmol] [rasmolscript] [script source]     - Domain d1f3fb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1f3fc_, region C [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1f3f] [1f3f_A] [1f3f_C] [1f3f_B] SWISS-PROT database: [P22887] Domain organization of [NDKC_DICDI] by SWISSPFAM Domain found in 1F3F: [NDK ] by SMART

Other resources with information on 1F3F

Community annotation for 1F3F at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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