1HJB	Transcription Dna	date	Jan 11, 2001
title	Crystal Structure Of Runx-1aml1cbfalpha Runt Domain And C Bzip Homodimer Bound To A Dna Fragment From The Csf-1r Prom
authors	T.H.Tahirov, K.Ogata
compound		source
Molecule: Ccaatenhancer Binding Protein Beta Chain: A, B, D, E Fragment: Residues 259-345 Synonym: Cebp Beta, Nfil-6 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Par2156
Molecule: Runt-Related Transcription Factor 1 Chain: C, F Fragment: Residues 60-182 Synonym: Core Binding Factor Alpha, Runx-1, Aml1, Pebp2alph Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Par2156
Molecule: Dna (5'-(Gpapapgpaptptptpcpcp Apapapcptpcptpgptpgpgptptpgpcpg)-3'); Chain: G, I Fragment: Fragment From Csf-1r Promoter Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: Dna (5'-(Cpcpgpcpapapcpcpapcp Apgpapgptptptpgpgpapapaptpcptpt)-3'); Chain: H, J Fragment: Fragment From Csf-1r Promoter Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 21 21 2	R_factor 0.244 R_Free 0.313
crystal cell	length a length b length c angle alpha angle beta angle gamma 102.165 109.273 127.405 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.00 Å
related structures	by homologous chain: 1H88, 1HJC, 1IO4
Gene Ontology	Chain Function Process Component A, D, E, B F, C
Primary reference	Structural analyses of DNA recognition by the AML1/Runx-1 Runt domain and its allosteric control by CBFbeta., Tahirov TH, Inoue-Bungo T, Morii H, Fujikawa A, Sasaki M, Kimura K, Shiina M, Sato K, Kumasaka T, Yamamoto M, Ishii S, Ogata K, Cell 2001 Mar 9;104(5):755-67. PMID:11257229

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk] Biological Unit Coordinates (1hjb.pdb1.gz) 65 Kb Biological Unit Coordinates (1hjb.pdb2.gz) 66 Kb CSU: Contacts of Structural Units for 1HJB Likely Quarternary Molecular Structure file(s) for 1HJB Structure Factors (225 Kb) Retrieve 1HJB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1HJB from S2C, [Save to disk] Re-refined 1hjb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1HJB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1HJB

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1HJB, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1hjba_, region A [Jmol] [rasmolscript] [script source]     - Domain d1hjbb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1hjbc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1hjbd_, region D [Jmol] [rasmolscript] [script source]     - Domain d1hjbe_, region E [Jmol] [rasmolscript] [script source]     - Domain d1hjbf_, region F [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1hjb_B] [1hjb_E] [1hjb_A] [1hjb_I] [1hjb_F] [1hjb] [1hjb_C] [1hjb_D] [1hjb_G] [1hjb_J] [1hjb_H] SWISS-PROT database: [P17676] [Q03347] Domain organization of [CEBPB_HUMAN] [RUNX1_MOUSE] by SWISSPFAM Domain found in 1HJB: [BRLZ ] by SMART

Other resources with information on 1HJB

Community annotation for 1HJB at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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