1HJC Transcription Dna date Jan 11, 2001
title Crystal Structure Of Runx-1aml1cbfalpha Runt Domain Bound Fragment From The Csf-1r Promoter
authors T.H.Tahirov, K.Ogata
compound source
Molecule: Runt-Related Transcription Factor 1
Chain: A, D
Fragment: Residues 60-182
Synonym: Core-Binding Factor, Alpha B Subunit, Runx-1, Aml1 Pebp2alphab, Cbfa2;
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Par2156

Molecule: Dna (5'-(Gpapapcptpcptpgptpgpgp Tptp 3');
Chain: B, E
Fragment: Fragment From Csf-1r Promoter
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Dna (5'-(Cpcpgpcpapapcpcpapcpap Gpap 3');
Chain: C, F
Fragment: Fragment From Csf-1r Promoter
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.223 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.094 104.073 116.185 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.65 Å
related structures by homologous chain: 1E50, 1HJB
Gene
Ontology
ChainFunctionProcessComponent
A, D


Primary referenceStructural analyses of DNA recognition by the AML1/Runx-1 Runt domain and its allosteric control by CBFbeta., Tahirov TH, Inoue-Bungo T, Morii H, Fujikawa A, Sasaki M, Kimura K, Shiina M, Sato K, Kumasaka T, Yamamoto M, Ishii S, Ogata K, Cell 2001 Mar 9;104(5):755-67. PMID:11257229
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (1hjc.pdb1.gz) 33 Kb
  • Biological Unit Coordinates (1hjc.pdb2.gz) 33 Kb
  • CSU: Contacts of Structural Units for 1HJC
  • Likely Quarternary Molecular Structure file(s) for 1HJC
  • Structure Factors (294 Kb)
  • Retrieve 1HJC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HJC from S2C, [Save to disk]
  • Re-refined 1hjc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1HJC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HJC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HJC, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hjca_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1hjcd_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hjc_D] [1hjc_B] [1hjc_A] [1hjc] [1hjc_C] [1hjc_F] [1hjc_E]
  • SWISS-PROT database: [Q03347]
  • Domain organization of [RUNX1_MOUSE] by SWISSPFAM
  • Other resources with information on 1HJC
  • Community annotation for 1HJC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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