1HJB CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN AND C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER date
authors Tahirov, T.H., Ogata, K.
compound source
symmetry
R_factor
R_Free 0.313
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
related structures by homologous chain: 1H88, 1HJC, 1IO4
Gene
Ontology
ChainFunctionProcessComponent
A, D, E, B


F, C


Primary referenceStructural analyses of DNA recognition by the AML1/Runx-1 Runt domain and its allosteric control by CBFbeta., Tahirov TH, Inoue-Bungo T, Morii H, Fujikawa A, Sasaki M, Kimura K, Shiina M, Sato K, Kumasaka T, Yamamoto M, Ishii S, Ogata K, Cell 2001 Mar 9;104(5):755-67. PMID:11257229
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk]
  • Biological Unit Coordinates (1hjb.pdb1.gz) 65 Kb
  • Biological Unit Coordinates (1hjb.pdb2.gz) 66 Kb
  • CSU: Contacts of Structural Units for 1HJB
  • Likely Quarternary Molecular Structure file(s) for 1HJB
  • Structure Factors (225 Kb)
  • Retrieve 1HJB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HJB from S2C, [Save to disk]
  • Re-refined 1hjb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1HJB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1HJB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1HJB, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hjba_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1hjbb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1hjbc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1hjbd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1hjbe_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1hjbf_, region F [Jmol] [rasmolscript] [script source]
  • Fold representative 1hjb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hjb_B] [1hjb_E] [1hjb_A] [1hjb_I] [1hjb_F] [1hjb] [1hjb_C] [1hjb_D] [1hjb_G] [1hjb_J] [1hjb_H]
  • SWISS-PROT database: [P17676] [Q03347]
  • Domain organization of [CEBPB_HUMAN] [RUNX1_MOUSE] by SWISSPFAM
  • Domain found in 1HJB: [BRLZ ] by SMART
    • Other resources with information on 1HJB
  • Community annotation for 1HJB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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