1JGO The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY date
authors Yusupova, G.Z., Yusupov, M.M., Cate, J.H.D., Noller, H.F.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 5.60
ligand 1MA, 2MG, 4SU, 5MC, 5MU, 7MG, H2U, M2G, OMC, OMG, PSU, YG enzyme
Gene
Ontology
ChainFunctionProcessComponent
E


F


G


H


I


J


K


L


M


N


O


P


Q


R


S


T


U


V


W


X


Primary referenceThe path of messenger RNA through the ribosome., Yusupova GZ, Yusupov MM, Cate JH, Noller HF, Cell 2001 Jul 27;106(2):233-41. PMID:11511350
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (169 Kb) [Save to disk]
  • Biological Unit Coordinates (1jgo.pdb1.gz) 159 Kb
  • LPC: Ligand-Protein Contacts for 1JGO
  • CSU: Contacts of Structural Units for 1JGO
  • Likely Quarternary Molecular Structure file(s) for 1JGO
  • Retrieve 1JGO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JGO from S2C, [Save to disk]
    • View 1JGO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1JGO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JGO, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jgoa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1jgoe_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1jgof_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1jgog_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1jgoh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1jgoi_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1jgoj_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1jgok_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1jgol_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1jgom_, region M [Jmol] [rasmolscript] [script source]
        - Domain d1jgon_, region N [Jmol] [rasmolscript] [script source]
        - Domain d1jgoo_, region O [Jmol] [rasmolscript] [script source]
        - Domain d1jgop_, region P [Jmol] [rasmolscript] [script source]
        - Domain d1jgoq_, region Q [Jmol] [rasmolscript] [script source]
        - Domain d1jgor_, region R [Jmol] [rasmolscript] [script source]
        - Domain d1jgos_, region S [Jmol] [rasmolscript] [script source]
        - Domain d1jgot_, region T [Jmol] [rasmolscript] [script source]
        - Domain d1jgou_, region U [Jmol] [rasmolscript] [script source]
        - Domain d1jgov_, region V [Jmol] [rasmolscript] [script source]
        - Domain d1jgow_, region W [Jmol] [rasmolscript] [script source]
        - Domain d1jgox_, region X [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jgo] [1jgo_B] [1jgo_H] [1jgo_K] [1jgo_T] [1jgo_Q] [1jgo_D] [1jgo_U] [1jgo_N] [1jgo_W] [1jgo_A] [1jgo_I] [1jgo_F] [1jgo_S] [1jgo_E] [1jgo_1] [1jgo_C] [1jgo_X] [1jgo_J] [1jgo_O] [1jgo_R] [1jgo_V] [1jgo_L] [1jgo_P] [1jgo_M] [1jgo_G]
  • SWISS-PROT database: [Q5SHN7] [P80376] [Q5SHN3] [P80377] [Q5SHQ1] [Q5SJ76] [Q5SJH3] [Q5SHP7] [Q5SLQ0] [Q5SHP2] [P80380] [P80371] [P80373] [Q5SHQ5] [Q5SLP8] [P17291] [Q5SHQ2] [P80374] [Q5SIH3]
  • Domain organization of [RS10_THET8] [RS11_THET8] [RS12_THET8] [RS13_THET8] [RS14Z_THET8] [RS15_THET8] [RS16_THET8] [RS17_THET8] [RS18_THET8] [RS19_THET8] [RS20_THET8] [RS2_THET8] [RS4_THET8] [RS5_THET8] [RS6_THET8] [RS7_THET8] [RS8_THET8] [RS9_THET8] [RSHX_THET8] by SWISSPFAM
  • Domains found in 1JGO: [KH] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
    • Other resources with information on 1JGO
  • Community annotation for 1JGO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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