1JGP The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY date
authors Yusupova, G.Z., Yusupov, M.M., Cate, J.H.D., Noller, H.F.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 7.00
ligand 1MA, 2MG, 4SU, 5MC, 5MU, 7MG, H2U, M2G, OMC, OMG, PSU, YG enzyme
Gene
Ontology
ChainFunctionProcessComponent
E


F


G


H


I


J


K


L


M


N


O


P


Q


R


S


T


U


V


W


X


Primary referenceThe path of messenger RNA through the ribosome., Yusupova GZ, Yusupov MM, Cate JH, Noller HF, Cell 2001 Jul 27;106(2):233-41. PMID:11511350
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (169 Kb) [Save to disk]
  • Biological Unit Coordinates (1jgp.pdb1.gz) 159 Kb
  • LPC: Ligand-Protein Contacts for 1JGP
  • CSU: Contacts of Structural Units for 1JGP
  • Likely Quarternary Molecular Structure file(s) for 1JGP
  • Retrieve 1JGP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JGP from S2C, [Save to disk]
    • View 1JGP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1JGP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JGP, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jgpa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1jgpe_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1jgpf_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1jgpg_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1jgph_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1jgpi_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1jgpj_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1jgpk_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1jgpl_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1jgpm_, region M [Jmol] [rasmolscript] [script source]
        - Domain d1jgpn_, region N [Jmol] [rasmolscript] [script source]
        - Domain d1jgpo_, region O [Jmol] [rasmolscript] [script source]
        - Domain d1jgpp_, region P [Jmol] [rasmolscript] [script source]
        - Domain d1jgpq_, region Q [Jmol] [rasmolscript] [script source]
        - Domain d1jgpr_, region R [Jmol] [rasmolscript] [script source]
        - Domain d1jgps_, region S [Jmol] [rasmolscript] [script source]
        - Domain d1jgpt_, region T [Jmol] [rasmolscript] [script source]
        - Domain d1jgpu_, region U [Jmol] [rasmolscript] [script source]
        - Domain d1jgpv_, region V [Jmol] [rasmolscript] [script source]
        - Domain d1jgpw_, region W [Jmol] [rasmolscript] [script source]
        - Domain d1jgpx_, region X [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jgp_C] [1jgp_T] [1jgp_X] [1jgp_N] [1jgp_S] [1jgp_G] [1jgp] [1jgp_1] [1jgp_U] [1jgp_Q] [1jgp_A] [1jgp_F] [1jgp_P] [1jgp_J] [1jgp_K] [1jgp_D] [1jgp_R] [1jgp_V] [1jgp_E] [1jgp_L] [1jgp_M] [1jgp_H] [1jgp_I] [1jgp_W] [1jgp_B] [1jgp_O]
  • SWISS-PROT database: [Q5SHN7] [P80376] [Q5SHN3] [P80377] [Q5SHQ1] [Q5SJ76] [Q5SJH3] [Q5SHP7] [Q5SLQ0] [Q5SHP2] [P80380] [P80371] [P80373] [Q5SHQ5] [Q5SLP8] [P17291] [Q5SHQ2] [P80374] [Q5SIH3]
  • Domain organization of [RS10_THET8] [RS11_THET8] [RS12_THET8] [RS13_THET8] [RS14Z_THET8] [RS15_THET8] [RS16_THET8] [RS17_THET8] [RS18_THET8] [RS19_THET8] [RS20_THET8] [RS2_THET8] [RS4_THET8] [RS5_THET8] [RS6_THET8] [RS7_THET8] [RS8_THET8] [RS9_THET8] [RSHX_THET8] by SWISSPFAM
  • Domains found in 1JGP: [KH] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
    • Other resources with information on 1JGP
  • Community annotation for 1JGP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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