1JGQ The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY date
authors Yusupova, G.Z., Yusupov, M.M., Cate, J.H.D., Noller, H.F.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 5.00
ligand 1MA, 2MG, 4SU, 5MC, 5MU, 7MG, H2U, M2G, OMC, OMG, PSU, YG enzyme
Gene
Ontology
ChainFunctionProcessComponent
E


F


G


H


I


J


K


L


M


N


O


P


Q


R


S


T


U


V


W


X


Primary referenceThe path of messenger RNA through the ribosome., Yusupova GZ, Yusupov MM, Cate JH, Noller HF, Cell 2001 Jul 27;106(2):233-41. PMID:11511350
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (169 Kb) [Save to disk]
  • Biological Unit Coordinates (1jgq.pdb1.gz) 158 Kb
  • LPC: Ligand-Protein Contacts for 1JGQ
  • CSU: Contacts of Structural Units for 1JGQ
  • Likely Quarternary Molecular Structure file(s) for 1JGQ
  • Retrieve 1JGQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JGQ from S2C, [Save to disk]
    • View 1JGQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1JGQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JGQ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jgqa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1jgqe_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1jgqf_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1jgqg_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1jgqh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1jgqi_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1jgqj_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1jgqk_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1jgql_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1jgqm_, region M [Jmol] [rasmolscript] [script source]
        - Domain d1jgqn_, region N [Jmol] [rasmolscript] [script source]
        - Domain d1jgqo_, region O [Jmol] [rasmolscript] [script source]
        - Domain d1jgqp_, region P [Jmol] [rasmolscript] [script source]
        - Domain d1jgqq_, region Q [Jmol] [rasmolscript] [script source]
        - Domain d1jgqr_, region R [Jmol] [rasmolscript] [script source]
        - Domain d1jgqs_, region S [Jmol] [rasmolscript] [script source]
        - Domain d1jgqt_, region T [Jmol] [rasmolscript] [script source]
        - Domain d1jgqu_, region U [Jmol] [rasmolscript] [script source]
        - Domain d1jgqv_, region V [Jmol] [rasmolscript] [script source]
        - Domain d1jgqw_, region W [Jmol] [rasmolscript] [script source]
        - Domain d1jgqx_, region X [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jgq_F] [1jgq_C] [1jgq_U] [1jgq_M] [1jgq_A] [1jgq_R] [1jgq_N] [1jgq_I] [1jgq] [1jgq_G] [1jgq_Q] [1jgq_X] [1jgq_H] [1jgq_E] [1jgq_S] [1jgq_B] [1jgq_D] [1jgq_L] [1jgq_K] [1jgq_P] [1jgq_O] [1jgq_V] [1jgq_J] [1jgq_T] [1jgq_W] [1jgq_1]
  • SWISS-PROT database: [Q5SHN7] [P80376] [Q5SHN3] [P80377] [Q5SHQ1] [Q5SJ76] [Q5SJH3] [Q5SHP7] [Q5SLQ0] [Q5SHP2] [P80380] [P80371] [P80373] [Q5SHQ5] [Q5SLP8] [P17291] [Q5SHQ2] [P80374] [Q5SIH3]
  • Domain organization of [RS10_THET8] [RS11_THET8] [RS12_THET8] [RS13_THET8] [RS14Z_THET8] [RS15_THET8] [RS16_THET8] [RS17_THET8] [RS18_THET8] [RS19_THET8] [RS20_THET8] [RS2_THET8] [RS4_THET8] [RS5_THET8] [RS6_THET8] [RS7_THET8] [RS8_THET8] [RS9_THET8] [RSHX_THET8] by SWISSPFAM
  • Domains found in 1JGQ: [KH] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
    • Other resources with information on 1JGQ
  • Community annotation for 1JGQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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