1JV5	Immune System, Sugar Binding Protein	date	Aug 28, 2001
title	Anti-Blood Group A Fv
authors	R.Thomas, S.I.Patenaude, C.R.Mackenzie, R.To, T.Hirama, N.M.Young S.V.Evans
compound		source
Molecule: Ig Kappa Chain Precursor V Region Chain: A Fragment: Anti-Blood Group A Fv Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Tg1 Expression_system_plasmid: Puce8
Molecule: Ig Chain Heavy Chain Precursor V Region Chain: B Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Tg1 Expression_system_plasmid: Puce8
symmetry	Space Group: P 21 21 21	R_factor 0.183 R_Free 0.223
crystal cell	length a length b length c angle alpha angle beta angle gamma 51.710 57.960 83.580 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
related structures	by homologous chain: 1FVC, 1JGL, 1WT5
Gene Ontology	Chain Function Process Component A
Primary reference	Structure of an anti-blood group A Fv and improvement of its binding affinity without loss of specificity., Thomas R, Patenaude SI, MacKenzie CR, To R, Hirama T, Young NM, Evans SV, J Biol Chem 2002 Jan 18;277(3):2059-64. PMID:11679577

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk] Biological Unit Coordinates (1jv5.pdb1.gz) 38 Kb CSU: Contacts of Structural Units for 1JV5 Likely Quarternary Molecular Structure file(s) for 1JV5 Structure Factors (108 Kb) Retrieve 1JV5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1JV5 from S2C, [Save to disk] Re-refined 1jv5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1JV5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1JV5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1JV5, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1jv5a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1jv5b_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1jv5] [1jv5_A] [1jv5_B] SWISS-PROT database: [P01594] Domain organization of [KV102_HUMAN] by SWISSPFAM Domain found in 1JV5: [IGv ] by SMART

Other resources with information on 1JV5

Community annotation for 1JV5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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