1JWG Protein Transport Protein Binding date Sep 04, 2001
title Vhs Domain Of Human Gga1 Complexed With Cation-Independent M6pr C-Terminal Peptide
authors T.Shiba, H.Takatsu, T.Nogi, N.Matsugaki, M.Kawasaki, N.Igarashi, M.Suzuki, R.Kato, T.Earnest, K.Nakayama, S.Wakatsuki
compound source
Molecule: Adp-Ribosylation Factor Binding Protein Gga1
Chain: A, B
Fragment: Vhs Domain(N-Terminal Domain)
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4t-2

Molecule: Cation-Independent Mannose-6-Phosphate Receptor
Chain: C, D
Fragment: C-Terminal Fragment
Synonym: M6pr
Engineered: Yes

Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Humans.
symmetry Space Group: P 21 21 21
R_factor 0.226 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.146 65.770 101.426 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand IOD enzyme
related structures by homologous chain: 1JWF, 1UJK
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis for recognition of acidic-cluster dileucine sequence by GGA1., Shiba T, Takatsu H, Nogi T, Matsugaki N, Kawasaki M, Igarashi N, Suzuki M, Kato R, Earnest T, Nakayama K, Wakatsuki S, Nature 2002 Feb 21;415(6874):937-41. PMID:11859376
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (1jwg.pdb1.gz) 28 Kb
  • Biological Unit Coordinates (1jwg.pdb2.gz) 27 Kb
  • LPC: Ligand-Protein Contacts for 1JWG
  • CSU: Contacts of Structural Units for 1JWG
  • Likely Quarternary Molecular Structure file(s) for 1JWG
  • Retrieve 1JWG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JWG from S2C, [Save to disk]
  • View 1JWG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JWG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1JWG, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jwga_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1jwgb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1jwg from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jwg_A] [1jwg_D] [1jwg_C] [1jwg] [1jwg_B]
  • SWISS-PROT database: [Q9UJY5] [P11717]
  • Belongs to the mannose 6-phosphate receptor (m6pr) family according to TCDB.
  • Domain organization of [GGA1_HUMAN] [MPRI_HUMAN] by SWISSPFAM
  • Domain found in 1JWG: [VHS ] by SMART
  • Other resources with information on 1JWG
  • Community annotation for 1JWG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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