1JWF Protein Transport date Sep 04, 2001
title Crystal Structure Of Human Gga1 Vhs Domain.
authors T.Shiba, H.Takatsu, T.Nogi, N.Matsugaki, M.Kawasaki, N.Igarashi, M R.Kato, T.Earnest, K.Nakayama, S.Wakatsuki
compound source
Molecule: Adp-Ribosylation Factor Binding Protein Gga1
Chain: A
Fragment: Vhs Domain(N-Terminal Domain)
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4t-2
symmetry Space Group: P 43 21 2
R_factor 0.222 R_Free 0.261
length a length b length c angle alpha angle beta angle gamma
55.120 55.120 105.513 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
related structures by homologous chain: 1JUQ, 1JWG

Primary referenceStructural basis for recognition of acidic-cluster dileucine sequence by GGA1., Shiba T, Takatsu H, Nogi T, Matsugaki N, Kawasaki M, Igarashi N, Suzuki M, Kato R, Earnest T, Nakayama K, Wakatsuki S, Nature 2002 Feb 21;415(6874):937-41. PMID:11859376
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • Biological Unit Coordinates (1jwf.pdb1.gz) 24 Kb
  • CSU: Contacts of Structural Units for 1JWF
  • Likely Quarternary Molecular Structure file(s) for 1JWF
  • Retrieve 1JWF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JWF from S2C, [Save to disk]
  • View 1JWF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JWF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1JWF, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jwfa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1jwf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jwf_A] [1jwf]
  • SWISS-PROT database: [Q9UJY5]
  • Domain organization of [GGA1_HUMAN] by SWISSPFAM
  • Domain found in 1JWF: [VHS ] by SMART
  • Other resources with information on 1JWF
  • Community annotation for 1JWF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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