1JWG	Protein Transport Protein Binding	date	Sep 04, 2001
title	Vhs Domain Of Human Gga1 Complexed With Cation-Independent M Terminal Peptide
authors	T.Shiba, H.Takatsu, T.Nogi, N.Matsugaki, M.Kawasaki, N.Igarashi, M R.Kato, T.Earnest, K.Nakayama, S.Wakatsuki
compound		source
Molecule: Adp-Ribosylation Factor Binding Protein Gga1 Chain: A, B Fragment: Vhs Domain(N-Terminal Domain) Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex4t-2
Molecule: Cation-Independent Mannose-6-Phosphate Receptor Chain: C, D Fragment: C-Terminal Fragment Synonym: M6pr Engineered: Yes		Synthetic: Yes Other_details: This Sequence Occurs Naturally In Humans.
symmetry	Space Group: P 21 21 21	R_factor 0.226 R_Free 0.261
crystal cell	length a length b length c angle alpha angle beta angle gamma 56.146 65.770 101.426 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	IOD	enzyme
related structures	by homologous chain: 1JWF, 1UJK
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural basis for recognition of acidic-cluster dileucine sequence by GGA1., Shiba T, Takatsu H, Nogi T, Matsugaki N, Kawasaki M, Igarashi N, Suzuki M, Kato R, Earnest T, Nakayama K, Wakatsuki S, Nature 2002 Feb 21;415(6874):937-41. PMID:11859376

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk] Biological Unit Coordinates (1jwg.pdb1.gz) 27 Kb Biological Unit Coordinates (1jwg.pdb2.gz) 26 Kb LPC: Ligand-Protein Contacts for 1JWG CSU: Contacts of Structural Units for 1JWG Likely Quarternary Molecular Structure file(s) for 1JWG Retrieve 1JWG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1JWG from S2C, [Save to disk]

View 1JWG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1JWG

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1JWG, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1jwga_, region A [Jmol] [rasmolscript] [script source]     - Domain d1jwgb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1jwg_A] [1jwg_D] [1jwg_C] [1jwg] [1jwg_B] SWISS-PROT database: [Q9UJY5] [P11717] Belongs to the mannose 6-phosphate receptor (m6pr) family according to TCDB. Domain organization of [GGA1_HUMAN] [MPRI_HUMAN] by SWISSPFAM Domain found in 1JWG: [VHS ] by SMART

Other resources with information on 1JWG

Community annotation for 1JWG at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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