1MM8 Transcription Dna date Sep 03, 2002
title Crystal Structure Of Tn5 Transposase Complexed With Me Dna
authors M.Steiniger-White, A.Bhasin, S.Lovell, I.Rayment, W.S.Reznikoff
compound source
Molecule: Me Dna Transferred Strand
Chain: B
Engineered: Yes
Synthetic: Yes
Other_details: Dna Synthesized By Idt

Molecule: Me Dna Non-Transferred Strand
Chain: C
Engineered: Yes

Synthetic: Yes
Other_details: Dna Synthesized By Idt

Molecule: Tn5 Transposase
Chain: A
Engineered: Yes
Mutation: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Tn5 Transposases
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Er2566
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptyb4
symmetry Space Group: P 65 2 2
R_factor 0.217 R_Free 0.271
length a length b length c angle alpha angle beta angle gamma
112.500 112.500 233.500 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
ligand MN enzyme
related structures by homologous chain: 1B7E, 1MUR
  • nuclease activity
  • endonuclease activity

  • Primary referenceEvidence for "unseen" transposase--DNA contacts., Steiniger-White M, Bhasin A, Lovell S, Rayment I, Reznikoff WS, J Mol Biol 2002 Oct 4;322(5):971-82. PMID:12367522
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (1mm8.pdb1.gz) 184 Kb
  • LPC: Ligand-Protein Contacts for 1MM8
  • CSU: Contacts of Structural Units for 1MM8
  • Likely Quarternary Molecular Structure file(s) for 1MM8
  • Retrieve 1MM8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MM8 from S2C, [Save to disk]
  • View 1MM8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MM8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1MM8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mm8a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1mm8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mm8] [1mm8_C] [1mm8_B] [1mm8_A]
  • SWISS-PROT database: [Q46731]
  • Domain organization of [TN5P_ECOLX] by SWISSPFAM
  • Other resources with information on 1MM8
  • Community annotation for 1MM8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science