1P2C	Immune System Hydrolase	date	Apr 15, 2003
title	Crystal Structure Analysis Of An Anti-Lysozyme Antibody
authors	A.Cauerhff, F.A.Goldbaum, B.C.Braden
compound		source
Molecule: Light Chain Anti-Lysozyme Antibody F10.6.6 Chain: A, D		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Strain: Balb-C
Molecule: Heavy Chain Vh+Ch1 Anti-Lysozyme Antibody F10.6.6 Chain: B, E		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Strain: Balb-C
Molecule: Lysozyme C Chain: C, F Synonym: 1,4-Beta-N-Acetylmuramidase C, Allergen Gal D 4, G Ec: 3.2.1.17		Organism_scientific: Gallus Gallus Organism_common: Chicken Organism_taxid: 9031
symmetry	Space Group: P 1	R_factor 0.204 R_Free 0.242
crystal cell	length a length b length c angle alpha angle beta angle gamma 44.660 73.750 83.780 66.59 74.74 85.44
method	X-Ray Diffraction	resolution	2.00 Å
ligand		enzyme	Hydrolase E.C.3.2.1.17 BRENDA
related structures	by homologous chain: 1G7L, 1HSW, 1UYW, 35C8
Gene Ontology	Chain Function Process Component A, D F, C
Primary reference	Structural mechanism for affinity maturation of an anti-lysozyme antibody., Cauerhff A, Goldbaum FA, Braden BC, Proc Natl Acad Sci U S A 2004 Mar 9;101(10):3539-44. Epub 2004 Feb 26. PMID:14988501

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (191 Kb) [Save to disk] Biological Unit Coordinates (1p2c.pdb1.gz) 96 Kb Biological Unit Coordinates (1p2c.pdb2.gz) 94 Kb CSU: Contacts of Structural Units for 1P2C Likely Quarternary Molecular Structure file(s) for 1P2C Retrieve 1P2C in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1P2C from S2C, [Save to disk]

View 1P2C in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1P2C

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1P2C, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1p2ca1, region A:1-107 [Jmol] [rasmolscript] [script source]     - Domain d1p2ca2, region A:108-212 [Jmol] [rasmolscript] [script source]     - Domain d1p2cb1, region B:301-413 [Jmol] [rasmolscript] [script source]     - Domain d1p2cb2, region B:414-516 [Jmol] [rasmolscript] [script source]     - Domain d1p2cc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1p2cd2, region D:1008-1111 [Jmol] [rasmolscript] [script source]     - Domain d1p2cd1, region D:901-1007 [Jmol] [rasmolscript] [script source]     - Domain d1p2ce1, region E:1201-1313 [Jmol] [rasmolscript] [script source]     - Domain d1p2ce2, region E:1314-1417 [Jmol] [rasmolscript] [script source]     - Domain d1p2cf_, region F [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1p2c_B] [1p2c_E] [1p2c_A] [1p2c_C] [1p2c_D] [1p2c] [1p2c_F] SWISS-PROT database: [P01837] [P00698] Domain organization of [IGKC_MOUSE] [LYSC_CHICK] by SWISSPFAM Domains found in 1P2C: [IG_like] [IGv] [LYZ1 ] by SMART

Other resources with information on 1P2C

Community annotation for 1P2C at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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