1QGH Metal Transport date Apr 27, 1999
title The X-Ray Structure Of The Unusual Dodecameric Ferritin From Listeria Innocua, Reveals A Novel Intersubunit Iron Binding Site.
authors A.Ilari, S.Stefanini, E.Chiancone, D.Tsernoglou
compound source
Molecule: Non-Heme Iron-Containing Ferritin
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Organism_scientific: Listeria Innocua
Organism_taxid: 1642
symmetry Space Group: P 21 21 21
R_factor 0.219 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.540 137.500 173.360 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.35 Å
ligand FE enzyme
related structures by homologous chain: 2BJY, 2BKC
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Primary referenceThe dodecameric ferritin from Listeria innocua contains a novel intersubunit iron-binding site., Ilari A, Stefanini S, Chiancone E, Tsernoglou D, Nat Struct Biol 2000 Jan;7(1):38-43. PMID:10625425
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (309 Kb) [Save to disk]
  • Biological Unit Coordinates (1qgh.pdb1.gz) 302 Kb
  • LPC: Ligand-Protein Contacts for 1QGH
  • CSU: Contacts of Structural Units for 1QGH
  • Likely Quarternary Molecular Structure file(s) for 1QGH
  • Retrieve 1QGH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QGH from S2C, [Save to disk]
  • View 1QGH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1QGH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1QGH, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qgha_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1qghb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1qghc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1qghd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1qghe_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1qghf_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1qghg_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1qghh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1qghi_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1qghj_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1qghk_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1qghl_, region L [Jmol] [rasmolscript] [script source]
  • Fold representative 1qgh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qgh_K] [1qgh_C] [1qgh_I] [1qgh_D] [1qgh_L] [1qgh_E] [1qgh_A] [1qgh_B] [1qgh_G] [1qgh_J] [1qgh_H] [1qgh_F] [1qgh]
  • SWISS-PROT database: [P80725]
  • Domain organization of [DPS_LISIN] by SWISSPFAM
  • Other resources with information on 1QGH
  • Community annotation for 1QGH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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