1RJ6 Lyase date Nov 18, 2003
title Crystal Structure Of The Extracellular Domain Of Murine Carb Anhydrase Xiv In Complex With Acetazolamide
authors D.A.Whittington, J.H.Grubb, A.Waheed, G.N.Shah, W.S.Sly, D.W.Chri
compound source
Molecule: Carbonic Anhydrase Xiv
Chain: A, B
Fragment: Extracellular Domain
Synonym: Carbonate Dehydratase Xiv, Ca-Xiv
Ec: 4.2.1.1
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Ca14, Car14, Catm
Expression_system: Chlorocebus Aethiops
Expression_system_common: African Green Monkey
Expression_system_taxid: 9534
Expression_system_cell_line: Cos-7
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcxn
symmetry Space Group: P 1 21 1
R_factor 0.207 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.200 75.800 73.800 90.00 99.20 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand AZM, BMA, MAN, NAG, ZN enzyme Lyase E.C.4.2.1.1 BRENDA
related structures by homologous chain: 1RJ5
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceExpression, assay, and structure of the extracellular domain of murine carbonic anhydrase XIV: implications for selective inhibition of membrane-associated isozymes., Whittington DA, Grubb JH, Waheed A, Shah GN, Sly WS, Christianson DW, J Biol Chem 2004 Feb 20;279(8):7223-8. Epub 2003 Dec 3. PMID:14660577
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (1rj6.pdb1.gz) 41 Kb
  • Biological Unit Coordinates (1rj6.pdb2.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 1RJ6
  • CSU: Contacts of Structural Units for 1RJ6
  • Likely Quarternary Molecular Structure file(s) for 1RJ6
  • Structure Factors (113 Kb)
  • Retrieve 1RJ6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RJ6 from S2C, [Save to disk]
  • Re-refined 1rj6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1RJ6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RJ6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RJ6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rj6a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1rj6b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rj6_B] [1rj6_A] [1rj6]
  • SWISS-PROT database: [Q9WVT6]
  • Domain organization of [CAH14_MOUSE] by SWISSPFAM
  • Domain found in 1RJ6: [Carb_anhydrase ] by SMART
  • Other resources with information on 1RJ6
  • Community annotation for 1RJ6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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