1RT7 Nucleotidyltransferase date Jul 29, 1998
title Hiv-1 Reverse Transcriptase Complexed With Uc84
authors J.Ren, D.K.Stammers, D.I.Stuart
compound source
Molecule: Hiv-1 Reverse Transcriptase
Chain: A
Ec: 2.7.7.49
Engineered: Yes
Organism_scientific: Hiv-1 M:B_hxb2r
Organism_taxid: 11706
Strain: Hxb2 Isolate
Gene: Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Hiv-1 Reverse Transcriptase
Chain: B
Ec: 2.7.7.49
Engineered: Yes

Organism_scientific: Hiv-1 M:B_hxb2r
Organism_taxid: 11706
Strain: Hxb2 Isolate
Gene: Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.258 R_Free 0.335
crystal
cell
length a length b length c angle alpha angle beta angle gamma
137.600 109.500 72.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand CSD, PO4, UC4 enzyme Transferase E.C.2.7.7.49 BRENDA
related structures by homologous chain: 1HPZ, 1TVR
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceCrystal structures of HIV-1 reverse transcriptase in complex with carboxanilide derivatives., Ren J, Esnouf RM, Hopkins AL, Warren J, Balzarini J, Stuart DI, Stammers DK, Biochemistry 1998 Oct 13;37(41):14394-403. PMID:9772165
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (166 Kb) [Save to disk]
  • Biological Unit Coordinates (1rt7.pdb1.gz) 162 Kb
  • LPC: Ligand-Protein Contacts for 1RT7
  • CSU: Contacts of Structural Units for 1RT7
  • Likely Quarternary Molecular Structure file(s) for 1RT7
  • Structure Factors (204 Kb)
  • Retrieve 1RT7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RT7 from S2C, [Save to disk]
  • Re-refined 1rt7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1RT7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RT7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1RT7, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rt7a2, region A:4-429 [Jmol] [rasmolscript] [script source]
        - Domain d1rt7a1, region A:430-539 [Jmol] [rasmolscript] [script source]
        - Domain d1rt7b1, region B:6-431 [Jmol] [rasmolscript] [script source]
  • Fold representative 1rt7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rt7_A] [1rt7_B] [1rt7]
  • SWISS-PROT database: [P04585]
  • Domain organization of [POL_HV1H2] by SWISSPFAM
  • Other resources with information on 1RT7
  • Community annotation for 1RT7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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