1RT7	Nucleotidyltransferase	date	Jul 29, 1998
title	Hiv-1 Reverse Transcriptase Complexed With Uc84
authors	J.Ren, D.K.Stammers, D.I.Stuart
compound		source
Molecule: Hiv-1 Reverse Transcriptase Chain: A Ec: 2.7.7.49 Engineered: Yes		Organism_scientific: Hiv-1 M:B_hxb2r Organism_taxid: 11706 Strain: Hxb2 Isolate Gene: Pol Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Hiv-1 Reverse Transcriptase Chain: B Ec: 2.7.7.49 Engineered: Yes		Organism_scientific: Hiv-1 M:B_hxb2r Organism_taxid: 11706 Strain: Hxb2 Isolate Gene: Pol Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.258 R_Free 0.335
crystal cell	length a length b length c angle alpha angle beta angle gamma 137.600 109.500 72.000 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	CSD, PO4, UC4	enzyme	Transferase E.C.2.7.7.49 BRENDA
related structures	by homologous chain: 1HPZ, 1TVR
Gene Ontology	Chain Function Process Component A B
Primary reference	Crystal structures of HIV-1 reverse transcriptase in complex with carboxanilide derivatives., Ren J, Esnouf RM, Hopkins AL, Warren J, Balzarini J, Stuart DI, Stammers DK, Biochemistry 1998 Oct 13;37(41):14394-403. PMID:9772165

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (164 Kb) [Save to disk] Biological Unit Coordinates (1rt7.pdb1.gz) 159 Kb LPC: Ligand-Protein Contacts for 1RT7 CSU: Contacts of Structural Units for 1RT7 Likely Quarternary Molecular Structure file(s) for 1RT7 Structure Factors (204 Kb) Retrieve 1RT7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1RT7 from S2C, [Save to disk] Re-refined 1rt7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1RT7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1RT7

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1RT7, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1rt7a2, region A:4-429 [Jmol] [rasmolscript] [script source]     - Domain d1rt7a1, region A:430-539 [Jmol] [rasmolscript] [script source]     - Domain d1rt7b1, region B:6-431 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1rt7_A] [1rt7_B] [1rt7] SWISS-PROT database: [P04585] Domain organization of [POL_HV1H2] by SWISSPFAM

Other resources with information on 1RT7

Community annotation for 1RT7 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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