1SJE HLA-DR1 complexed with a 16 residue HIV capsid peptide bound in a hairpin conformation date
authors Zavala-Ruiz, Z., Strug, I., Walker, B.D., Norris, P.J., Stern, L.J.
compound source
symmetry
R_factor
R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.45
related structures by homologous chain: 1D6E, 1SBB, 1T5W, 1U3H
Gene
Ontology
ChainFunctionProcessComponent
A


B


D
  • toxin activity


  • Primary referenceA hairpin turn in a class II MHC-bound peptide orients residues outside the binding groove for T cell recognition., Zavala-Ruiz Z, Strug I, Walker BD, Norris PJ, Stern LJ, Proc Natl Acad Sci U S A 2004 Sep 7;101(36):13279-84. Epub 2004 Aug 26. PMID:15331779
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk]
  • Biological Unit Coordinates (1sje.pdb1.gz) 314 Kb
  • CSU: Contacts of Structural Units for 1SJE
  • Likely Quarternary Molecular Structure file(s) for 1SJE
  • Structure Factors (429 Kb)
  • Retrieve 1SJE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SJE from S2C, [Save to disk]
  • Re-refined 1sje structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1SJE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SJE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1SJE, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1sjea2, region A:4-81 [Jmol] [rasmolscript] [script source]
        - Domain d1sjea1, region A:82-181 [Jmol] [rasmolscript] [script source]
        - Domain d1sjeb2, region B:1-92 [Jmol] [rasmolscript] [script source]
        - Domain d1sjeb1, region B:93-190 [Jmol] [rasmolscript] [script source]
        - Domain d1sjed1, region D:1-121 [Jmol] [rasmolscript] [script source]
        - Domain d1sjed2, region D:122-239 [Jmol] [rasmolscript] [script source]
  • Fold representative 1sje from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1sje_D] [1sje_A] [1sje] [1sje_C] [1sje_B]
  • SWISS-PROT database: [P04229] [P01903] [P0A0L5] [P12495]
  • Domain organization of [2B11_HUMAN] [DRA_HUMAN] [ENTC3_STAAU] [GAG_HV1Z2] by SWISSPFAM
  • Domains found in 1SJE: [IGc1] [MHC_II_alpha] [MHC_II_beta ] by SMART
  • Other resources with information on 1SJE
  • Community annotation for 1SJE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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