1SOA	Protein Binding	date	Mar 13, 2004
title	Human Dj-1 With Sulfinic Acid
authors	R.Canet-Aviles, M.A.Wilson, D.W.Miller, R.Ahmad, C.Mclendon, S.Bandyopadhyay, M.J.Baptista, D.Ringe, G.A.Petsko, M.R.Cookson
compound		source
Molecule: Rna-Binding Protein Regulatory Subunit; Oncogene Chain: A Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
symmetry	Space Group: P 31 2 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 75.130 75.130 75.094 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.20 Å
ligand	CSD	enzyme
related structures	by homologous chain: 1P5F, 1Q2U
Gene Ontology	Chain Function Process Component A transcription coactivator ac... peroxiredoxin activity glyoxalase (glycolic acid-fo... synaptic transmission, dopam... negative regulation of prote... positive regulation of pepti... dopamine uptake involved in ... positive regulation of L-dop...
Primary reference	The Parkinson's disease protein DJ-1 is neuroprotective due to cysteine-sulfinic acid-driven mitochondrial localization., Canet-Aviles RM, Wilson MA, Miller DW, Ahmad R, McLendon C, Bandyopadhyay S, Baptista MJ, Ringe D, Petsko GA, Cookson MR, Proc Natl Acad Sci U S A. 2004 Jun 15;101(24):9103-8. Epub 2004 Jun 4. PMID:15181200

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk] Biological Unit Coordinates (1soa.pdb1.gz) 141 Kb LPC: Ligand-Protein Contacts for 1SOA CSU: Contacts of Structural Units for 1SOA Likely Quarternary Molecular Structure file(s) for 1SOA Structure Factors (1027 Kb) Retrieve 1SOA in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1SOA from S2C, [Save to disk] Re-refined 1soa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1SOA in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1SOA

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1SOA from the CEP Server. Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1SOA, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1soaa_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1soa_A] [1soa] SWISS-PROT database: [Q99497] Domain organization of [PARK7_HUMAN] by SWISSPFAM

Other resources with information on 1SOA

Community annotation for 1SOA at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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