1VYW	Transferase	date	May 07, 2004
title	Structure Of Cdk2cyclin A With Pnu-292137
authors	P.Pevarello, M.G.Brasca, R.Amici, P.Orsini, G.Traquandi, L.Corti, P.Sansonna, M.Villa, B.S.Pierce, M.Pulici, P.Giordano, K.Martina E.L.Fritzen, R.A.Nugent, E.Casale, A.Cameron, M.Ciomei, F.Rolett A.Isacchi, G.Fogliatto, E.Pesenti, W.Pastori, A.Marsiglio, K.L.L P.M.Clare, F.Fiorentini, M.Varasi, A.Vulpetti, M.A.Warpehoski
compound		source
Molecule: Cell Division Protein Kinase 2 Chain: A, C Synonym: P33 Protein Kinase Ec: 2.7.1.37 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_cell_line: High Five Expression_system_vector_type: Baculovirus
Molecule: Cyclin A2 Chain: B, D Fragment: C-Terminal Portion, Residues 174-432 Synonym: Cyclin A Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_plasmid: Pgex6p
symmetry	Space Group: P 62 2 2	R_factor 0.229 R_Free 0.258
crystal cell	length a length b length c angle alpha angle beta angle gamma 184.223 184.223 214.720 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	292, SO4 BindingDB	enzyme	Transferase E.C.2.7.1.37 BRENDA
related structures	by homologous chain: 1OIY, 1PKD, 1PXP
Gene Ontology	Chain Function Process Component A, C
Primary reference	3-Aminopyrazole inhibitors of CDK2/cyclin A as antitumor agents. 1. Lead finding., Pevarello P, Brasca MG, Amici R, Orsini P, Traquandi G, Corti L, Piutti C, Sansonna P, Villa M, Pierce BS, Pulici M, Giordano P, Martina K, Fritzen EL, Nugent RA, Casale E, Cameron A, Ciomei M, Roletto F, Isacchi A, Fogliatto G, Pesenti E, Pastori W, Marsiglio A, Leach KL, Clare PM, Fiorentini F, Varasi M, Vulpetti A, Warpehoski MA, J Med Chem 2004 Jun 17;47(13):3367-80. PMID:15189033

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (198 Kb) [Save to disk] Biological Unit Coordinates (1vyw.pdb1.gz) 98 Kb Biological Unit Coordinates (1vyw.pdb2.gz) 97 Kb LPC: Ligand-Protein Contacts for 1VYW CSU: Contacts of Structural Units for 1VYW Likely Quarternary Molecular Structure file(s) for 1VYW Structure Factors (2100 Kb) Retrieve 1VYW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1VYW from S2C, [Save to disk] Re-refined 1vyw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1VYW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1VYW

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1VYW, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1vywa_, region A [Jmol] [rasmolscript] [script source]     - Domain d1vywb1, region B:175-309 [Jmol] [rasmolscript] [script source]     - Domain d1vywb2, region B:310-432 [Jmol] [rasmolscript] [script source]     - Domain d1vywc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1vywd1, region D:178-309 [Jmol] [rasmolscript] [script source]     - Domain d1vywd2, region D:310-432 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1vyw_B] [1vyw] [1vyw_C] [1vyw_A] [1vyw_D] SWISS-PROT database: [P20248] [P24941] Domain organization of [CCNA2_HUMAN] [CDK2_HUMAN] by SWISSPFAM Domains found in 1VYW: [CYCLIN] [Cyclin_C] [S_TKc ] by SMART

Other resources with information on 1VYW

Community annotation for 1VYW at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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