1XTB Isomerase date Oct 21, 2004
title Crystal Structure Of Rabbit Phosphoglucose Isomerase Complex Sorbitol-6-Phosphate
authors J.H.Lee, C.J.Jeffery
compound source
Molecule: Phosphoglucose Isomerase
Chain: A, B
Synonym: Pgi
Ec: 5.3.1.9
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
symmetry Space Group: C 2 2 21
R_factor 0.199 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.770 115.190 271.790 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand S6P enzyme Isomerase E.C.5.3.1.9 BRENDA
related structures by homologous chain: 1JLH, 1KOJ
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • cytokine activity


  • Primary referenceThe crystal structure of rabbit phosphoglucose isomerase complexed with D-sorbitol-6-phosphate, an analog of the open chain form of D-glucose-6-phosphate., Lee JH, Jeffery CJ, Protein Sci 2005 Mar;14(3):727-34. Epub 2005 Feb 2. PMID:15689508
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (191 Kb) [Save to disk]
  • Biological Unit Coordinates (1xtb.pdb1.gz) 187 Kb
  • LPC: Ligand-Protein Contacts for 1XTB
  • CSU: Contacts of Structural Units for 1XTB
  • Likely Quarternary Molecular Structure file(s) for 1XTB
  • Structure Factors (1195 Kb)
  • Retrieve 1XTB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XTB from S2C, [Save to disk]
  • Re-refined 1xtb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1XTB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1XTB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1XTB, from MSDmotif at EBI
  • Fold representative 1xtb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xtb] [1xtb_A] [1xtb_B]
  • SWISS-PROT database: [Q9N1E2]
  • Domain organization of [G6PI_RABIT] by SWISSPFAM
  • Other resources with information on 1XTB
  • Community annotation for 1XTB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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