2BIY	Transferase	date	Jan 26, 2005
title	Structure Of Pdk1-S241a Mutant Kinase Domain
authors	D.Komander, G.S.Kular, M.Deak, D.R.Alessi, D.M.F.Van Aalten
compound		source
Molecule: 3-Phosphoinositide Dependent Protein Kinase-1 Chain: A Fragment: Residues 51-360 (Kinase Domain) Synonym: Hpdk1 Ec: 2.7.1.37 Engineered: Yes Mutation: Yes Other_details: T-Loop Mutant Ser241ala		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_cell_line: Sf21 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 32 2 1	R_factor 0.185 R_Free 0.230
crystal cell	length a length b length c angle alpha angle beta angle gamma 121.827 121.827 47.750 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.95 Å
ligand	ATP, GOL, SO4	enzyme	Transferase E.C.2.7.1.37 BRENDA
related structures	by homologous chain: 1H1W, 1UU9
Gene Ontology	Chain Function Process Component A
Primary reference	Role of T-loop phosphorylation in PDK1 activation, stability, and substrate binding., Komander D, Kular G, Deak M, Alessi DR, van Aalten DM, J Biol Chem. 2005 May 13;280(19):18797-802. Epub 2005 Mar 1. PMID:15741170

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk] Biological Unit Coordinates (2biy.pdb1.gz) 53 Kb LPC: Ligand-Protein Contacts for 2BIY CSU: Contacts of Structural Units for 2BIY Likely Quarternary Molecular Structure file(s) for 2BIY Structure Factors (204 Kb) Retrieve 2BIY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2BIY from S2C, [Save to disk] Re-refined 2biy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2BIY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2BIY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2BIY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2biy_A] [2biy] SWISS-PROT database: [O15530] Domain organization of [PDPK1_HUMAN] by SWISSPFAM Domain found in 2BIY: [S_TKc ] by SMART

Other resources with information on 2BIY

Community annotation for 2BIY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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