2FL0 Metal Binding Protein date Jan 05, 2006
title Oxidized (All Ferric) Form Of The Azotobacter Vinelandii Bacterioferritin
authors L.Swartz, K.Kunchinskas, H.Li, T.L.Poulos, W.N.Lanzilotta
compound source
Molecule: Bacterioferritin
Chain: A, B, C, D, E, F, G, H
Synonym: Bfr, Cytochrome B-557.5
Organism_scientific: Azotobacter Vinelandii
Organism_taxid: 354
symmetry Space Group: H 3
R_factor 0.203 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
124.480 124.480 285.112 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand FE2, HEM, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceRedox-Dependent Structural Changes in the Azotobacter vinelandii Bacterioferritin: New Insights into the Ferroxidase and Iron Transport Mechanism(,)., Swartz L, Kuchinskas M, Li H, Poulos TL, Lanzilotta WN, Biochemistry. 2006 Apr 11;45(14):4421-8. PMID:16584178
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (226 Kb) [Save to disk]
  • Biological Unit Coordinates (2fl0.pdb1.gz) 641 Kb
  • LPC: Ligand-Protein Contacts for 2FL0
  • CSU: Contacts of Structural Units for 2FL0
  • Likely Quarternary Molecular Structure file(s) for 2FL0
  • Structure Factors (1350 Kb)
  • Retrieve 2FL0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FL0 from S2C, [Save to disk]
  • Re-refined 2fl0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2FL0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FL0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2FL0, from MSDmotif at EBI
  • Fold representative 2fl0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fl0_E] [2fl0_F] [2fl0_A] [2fl0_H] [2fl0_D] [2fl0_G] [2fl0_B] [2fl0] [2fl0_C]
  • SWISS-PROT database: [P22759]
  • Domain organization of [BFR_AZOVI] by SWISSPFAM
  • Other resources with information on 2FL0
  • Community annotation for 2FL0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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