3FO5 Lipid Transport date Dec 27, 2008
title Human Start Domain Of Acyl-Coenzyme A Thioesterase 11 (Acot1
authors M.I.Siponen, L.Lehtio, C.H.Arrowsmith, H.Berglund, C.Bountra, R.C L.G.Dahlgren, A.M.Edwards, S.Flodin, A.Flores, S.Graslund, M.Ham A.Johansson, I.Johansson, T.Karlberg, T.Kotenyova, M.Moche, M.E. P.Nordlund, T.Nyman, C.Persson, J.Sagemark, A.G.Thorsell, L.Tres S.Van-Den-Berg, J.Weigelt, M.Welin, M.Wikstrom, M.Wisniewska, H. Structural Genomics Consortium (Sgc)
compound source
Molecule: Thioesterase, Adipose Associated, Isoform Bfit2
Chain: A, B
Fragment: Startdomain, Unp Residues 339-594
Synonym: Acyl-Coa Thioesterase 11, Acyl-Coa Thioesterase 11 Cra_b;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Acot11, Hcg_33028, Rp11-240d10.1-002
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Lex
symmetry Space Group: C 2 2 21
R_factor 0.202 R_Free 0.251
length a length b length c angle alpha angle beta angle gamma
52.440 130.080 165.230 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 1PE, CL, GOL, TCE enzyme
Gene HCG
A, B

Primary referenceComparative structural analysis of lipid binding START domains., Thorsell AG, Lee WH, Persson C, Siponen MI, Nilsson M, Busam RD, Kotenyova T, Schuler H, Lehtio L, PLoS One. 2011;6(6):e19521. Epub 2011 Jun 30. PMID:21738568
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (3fo5.pdb1.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 3FO5
  • CSU: Contacts of Structural Units for 3FO5
  • Likely Quarternary Molecular Structure file(s) for 3FO5
  • Structure Factors (568 Kb)
  • Retrieve 3FO5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FO5 from S2C, [Save to disk]
  • Re-refined 3fo5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FO5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FO5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3FO5, from MSDmotif at EBI
  • Fold representative 3fo5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fo5_B] [3fo5] [3fo5_A]
  • SWISS-PROT database: [Q8WXI4]
  • Domain organization of [ACO11_HUMAN] by SWISSPFAM
  • Domain found in 3FO5: [START ] by SMART
  • Other resources with information on 3FO5
  • Community annotation for 3FO5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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