OCA Atlas for 3V5I

3V5I

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene

SAOUHSC

Gene
Ontology

Chain	Function	Process	Component
Q, I, J, D, V, G, b, S, L, K, M, U, W, C, B, A, Z, T, Y, H, F, E, O, R, N, P, X, a

Primary reference

Insights into structural network responsible for oligomerization and activity of bacterial virulence regulator caseinolytic protease P (ClpP) protein., Gersch M, List A, Groll M, Sieber SA, J Biol Chem. 2012 Mar 16;287(12):9484-94. Epub 2012 Jan 30. PMID:22291011

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1671 Kb) [Save to disk]

Biological Unit Coordinates (3v5i.pdb1.gz) 827 Kb

Biological Unit Coordinates (3v5i.pdb2.gz) 829 Kb

CSU: Contacts of Structural Units for 3V5I

Structure Factors (1203 Kb)

Retrieve 3V5I in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3V5I from S2C, [Save to disk]

Re-refined 3v5i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3V5I in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3v5i] [3v5i_A] [3v5i_B] [3v5i_C] [3v5i_D] [3v5i_E] [3v5i_F] [3v5i_G] [3v5i_H] [3v5i_I] [3v5i_J] [3v5i_K] [3v5i_L] [3v5i_M] [3v5i_N] [3v5i_O] [3v5i_P] [3v5i_Q] [3v5i_R] [3v5i_S] [3v5i_T] [3v5i_U] [3v5i_V] [3v5i_W] [3v5i_X] [3v5i_Y] [3v5i_Z] [3v5i_a] [3v5i_b]

SWISS-PROT database:

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