5DO4		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	0G6, ADS, CA, CFZ, EDO, GOL, MG, MRD, NAG, UFT, UMS	enzyme
Gene Ontology	Chain Function Process Component H L
Primary reference	Evoking picomolar binding in RNA by a single phosphorodithioate linkage., Abeydeera ND, Egli M, Cox N, Mercier K, Conde JN, Pallan PS, Mizurini DM, Sierant M, Hibti FE, Hassell T, Wang T, Liu FW, Liu HM, Martinez C, Sood AK, Lybrand TP, Frydman C, Monteiro RQ, Gomer RH, Nawrot B, Yang X, Nucleic Acids Res. 2016 Aug 26. pii: gkw725. PMID:27566147

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk] Biological Unit Coordinates (5do4.pdb1.gz) 63 Kb LPC: Ligand-Protein Contacts for 5DO4 CSU: Contacts of Structural Units for 5DO4 Structure Factors (664 Kb) Retrieve 5DO4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5DO4 from S2C, [Save to disk] Re-refined 5do4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DO4 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5do4] [5do4_A] [5do4_H] [5do4_L] SWISS-PROT database: Domain found in 5DO4: [Tryp_SPc ] by SMART

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