5DVX	Lyase	date	Sep 21, 2015
title	Crystal Structure Of The Catalytic-Domain Of Human Carbonic Ix At 1.6 Angstrom Resolution
authors	B.P.Mahon, L.Socorro, J.M.Driscoll, R.Mckenna
compound		source
Molecule: Carbonic Anhydrase 9 Chain: A, B Fragment: Catalytic-Domain (Unp Residues 140-399) Synonym: Carbonate Dehydratase Ix,Carbonic Anhydrase Ix,Cai Antigen Mn,P5458n,Renal Cell Carcinoma-Associated Antigen Associated Antigen G250,Pmw1; Ec: 4.2.1.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ca9, G250, Mn Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
symmetry	Space Group: P 21 21 21	R_factor 0.168 R_Free 0.191
crystal cell	length a length b length c angle alpha angle beta angle gamma 57.877 102.744 108.964 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.60 Å
ligand	CL, GOL, TRS, ZN	enzyme	Lyase E.C.4.2.1.1 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure of carbonic anhydrase IX is adapted for low pH catalysis., Mahon BP, Bhatt A, Socorro L, Driscoll JM, Okoh C, Lomelino CL, Mboge MY, Kurian JJ, Tu C, Agbandje-McKenna M, Frost SC, McKenna R, Biochemistry. 2016 Jul 20. PMID:27439028

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (197 Kb) [Save to disk] Biological Unit Coordinates (5dvx.pdb1.gz) 99 Kb Biological Unit Coordinates (5dvx.pdb2.gz) 95 Kb LPC: Ligand-Protein Contacts for 5DVX CSU: Contacts of Structural Units for 5DVX Structure Factors (1951 Kb) Retrieve 5DVX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5DVX from S2C, [Save to disk] Re-refined 5dvx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5DVX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5DVX

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5dvx_A] [5dvx_B] [5dvx] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5DVX: [Carb_anhydrase ] by SMART

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