5EDK		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	CGU, MG, NAG	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	How the Linker Connecting the Two Kringles Influences Activation and Conformational Plasticity of Prothrombin., Pozzi N, Chen Z, Di Cera E, J Biol Chem. 2016 Jan 12. pii: jbc.M115.700401. PMID:26763231

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk] Biological Unit Coordinates (5edk.pdb1.gz) 87 Kb LPC: Ligand-Protein Contacts for 5EDK CSU: Contacts of Structural Units for 5EDK Structure Factors (431 Kb) Retrieve 5EDK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5EDK from S2C, [Save to disk] Re-refined 5edk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5EDK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5edk] [5edk_A] SWISS-PROT database: Domains found in 5EDK: [GLA] [KR] [Tryp_SPc ] by SMART

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