5GAT SOLUTION NMR STRUCTURE OF THE WILD TYPE DNA BINDING DOMAIN OF AREA COMPLEXED TO A 13BP DNA CONTAINING A CGATA SITE, 35 STRUCTURES date
authors Clore, G.M., Starich, M., Wikstrom, M., Gronenborn, A.M.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffraction, 35 Modelsresolution
ligand ZN enzyme
related structures by homologous chain: 4GAT, 6GAT
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe solution structure of a fungal AREA protein-DNA complex: an alternative binding mode for the basic carboxyl tail of GATA factors., Starich MR, Wikstrom M, Arst HN Jr, Clore GM, Gronenborn AM, J Mol Biol 1998 Apr 3;277(3):605-20. PMID:9533883
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1104 Kb) [Save to disk]
  • Biological Unit Coordinates (5gat.pdb1.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 5GAT
  • CSU: Contacts of Structural Units for 5GAT
  • Retrieve 5GAT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GAT from S2C, [Save to disk]
  • View 5GAT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5GAT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 5GAT, from MSDmotif at EBI
  • Genome occurence of 5GAT's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d5gata_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 5gat from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5gat_B] [5gat] [5gat_A] [5gat_C]
  • SWISS-PROT database: [P17429]
  • Domain organization of [AREA_EMENI] by SWISSPFAM
  • Domain found in 5GAT: [ZnF_GATA ] by SMART
  • Other resources with information on 5GAT
  • Community annotation for 5GAT at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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